Gene detail

Gene detail information of Glyur000082s00007617.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06770.2	2.00E-133	Pectin lyase-like superfamily protein
NR	KHN03332.1	0	Putative polygalacturonase [Glycine soja]
COG	YP_822529.1	7.00E-33	glycoside hydrolase family protein [Candidatus Solibacter usitatus Ellin6076]
Swissprot	tr\|A7PZL3\|PGLR_VITVI	1.00E-105	Probable polygalacturonase
trEMBL	tr\|I1MRM1\|I1MRM1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G03300.1}

Sequence

Transcript Sequence

>Glyur000082s00007617.1
ATTCTCTCTCTCTCTATCTCTCTCTCTCAGCCCCTGCAATTTTTTCCTTTTTTGGTTCTTTCTTGGTGCTTGGGCACTACTTAGTTCTGCCTCTTGTATCTTCTGCTCCCCTTTTGTCAGAGGCTTTGACCAAAGAACATGCTAGTGGCATTGTTGTTGCTGGTGGCGTTGAGCAATGACGTGAGAGTGAATGGTGAAGGTGGTGGAGGAAGCAGGCAATGTGAGTTGAATCCGGCACTAAAACCAAGACCACACAGTGTCTCCATTTTGGAGTTTGGTGCTGTTGGGGATGGTAAAACGTTGAACACTATTGCATTCCAGAATGCCATCTTCTATCTCAAGTCATTTGCTGATAAAGGTGGTGCTCAGCTATATGATCCATATCATTGGGAAGTTGTTGATCCCTTACCTTCTTATGGCCGAGGAATTGAAGTTCCTGGGGGAAGATATCAGAGCTTGATAAATGGATACAAGTTACATGATGTGGTCATAACAGGTAATAATGGAACCATTGATGGCATGGGATTGGCTTGGTGGGAGTCATTTAGCTCTCACTCCCTGAACTACAGCCGTCCTCATCTGGTTGAATTAGTGGCATCCAATGATGTGGTAGTTTCAAATCTTTCATTCTTGAACGCCCCTGCATATAGCATCCACCCAGTTTATTGCAGGCATGTTCTGTTCTGTGCTGCTTCTAAACATTACTCAAATCATACGTATTATGAAAAAGAAAAAAAAATCCCCTTATACTATTCTTCAGATCATGTTTGTATAGAGGATTGTGTCATTGCCACTGGCTATGATGCAATTGCCCTCAAAAGTGGCTGGGACGAGTATGGCATTGCCTACGGCCGGCCGACCGAGAATGTGCACATCAGAAGGGTACAACTGCAGGCTTCTTCCGGCTCTACTATTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAAAGTTGTTGTGGAGCATGTCCATCTCCACAACTCAAATGGTGGCATTGAGTTCAGAACCACAAGGGGCAGAGGTGGTTATATGAAGGAAATCATCATATCAGACATAGAAATGAAGAATATCTACACAGCAATTGCTGCCACAGGTTATTGTGGGTCTCATCCTGATGACAAATTTGATCCTAATGCTCTCCCACTTTTGGATCACTTCATTTTGCAAGATATGATAGGCACAAACATCACTATTGCTGGAAGTTTTGCTGGACTACAAGAATCTCCTTTCACTAACATATGCCTTTCCAACATAACCTTGTATACAAATTCTGCTTCCTCCATTACTTGGGAATGCTCAAATGTCTCTGGATTTTCAGATTCTGTTCTTCCTAAACCCTGTCCTGATCTTGAGAACACTTCAGATTCTTCCTCATTCTGTCTCTCCATGTTGGGTGTCAATGGAAAAAGTGCATCCCTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00082	379881	382758	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000082s00007617.1	PF12708.2	Pectate_lyase_3	41	79	2.80E-06
Glyur000082s00007617.1	PF00295.12	Glyco_hydro_28	107	390	1.10E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.379
SRR1783600	control	3.510
SRR1783602	moderate drought stress	3.348
SRR1811619	moderate drought stress	3.493

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.825
DRR006520	Root Summer glycyrrhizin high producing strain	4.766
DRR006521	Root Winter glycyrrhizin high producing strain	4.220
DRR006522	Root Winter glycyrrhizin high producing strain	4.340
DRR006523	Root Summer glycyrrhizin low producing strain	5.760
DRR006524	Root Summer glycyrrhizin low producing strain	5.920
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.148
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.974

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.824
SRR2868004	Drought Stress (root)	15.732
SRR2967015	Control (root)	11.820

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.282
SRR9715740	Leaf	3.108
SRR9715741	Leaf	2.450
SRR9715739	Root	1.992
SRR9715742	Root	3.083
SRR9715743	Root	2.920

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.197
SRR8749028	MeJA induced 9h	9.203
SRR8749029	MeJA induced 9h	5.385
SRR8749030	Uninduced	3.186
SRR8749031	Uninduced	2.137
SRR8749032	Uninduced	1.476

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.242
SRR8400027	Control - Root	11.579