Gene detail

Gene detail information of Glyur000082s00007607.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16110.1	2.00E-82	response regulator 2
NR	XP_003594816.1	2.06E-123	Two-component response regulator ARR2 [Medicago truncatula]
COG	YP_462742.1	2.00E-13	sigma-54-dependent transcriptional regulator [Syntrophus aciditrophicus SB]
Swissprot	tr\|Q9ZWJ9\|ARR2_ARATH	7.00E-105	Two-component response regulator ARR2
trEMBL	tr\|G7IMX2\|G7IMX2_MEDTR	8.00E-124	B-type response regulator {ECO:0000313\|EMBL:AES65067.1}

Sequence

Transcript Sequence

>Glyur000082s00007607.1
CACTTTTTTATACCAAATTCCCTAACTATTTGAGCAAAACACGAGCGTTTGTGCTGTGTGTTTCATGTTTTGTCTGCGTTTGTTGTTGTTGTGGTGCTGTTTGGATCTCTGAACTGTCATGAATCTCAGCAACGGCAAAGGATCCTTGTCGACGGTTACTTCGAGTGGGACTTTGAATTCCGGCGACGCCGTCTCCGCCCCGTTTCCGGCGGGTCTGCGGGTTCTGGTGGTGATTGATGATCCCACGTGCCTCATGATCCTTGAGAAGATGCTGCGCACATGTCTCTACGAAGTTACGANATGCAATCGAGCAGAGACCGCACTCTCACTCCTCAGAGAGAACAAAAACGGGTTTGACATTGTCATAAGTGNCGTGCATATGCCAGACATGGATGGATTTAAGCTTTTAGAACACATTGGGTTGGAGATGGACCTTCCGGTTATTATTATGATGTCCGCAGATGATGGTAAGAGTGTTGTTATGAAGGGTGTAACACATGGTGCTTGTGATTACCTTATTAAACCTGTTCACATAGAGGCCTTGAAGAACACATGGCAACATGTGATTCGGAAGAAAAGGAACGAGGATGAGGAAGCGGACGAGAGAGATGACACGTCCNCGTTAAAGAAGCCGCGGGTTGTTTGGTCTGTGGAGCTCCATCAACAGTTTGTGGCTGCTGTGGATAAACTGGGAATTGACAAGGCTGTTCCTAGAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCAAGCCACCTGCAGGACTTGGTAGGTCAACTGCAAAAGCAGGCTTTTGAAAACCCAAGGTTAAGATTTGGAGAAGGGCAACAACAACATTTGAGTACTAGTAAACCAATGAACCTTCTTCGTGGAATTCCTACCAATATGGAGCCGAAGCAGCTCGCCAATCTGCNCCAGTCTACAAAATCCCTTGGCAACTTGAATACGCAAGTCAATACGGGAATTAAAGGATCTGGAGGATTTCCATGTTATGATATTTTTAATGAACTGCACCATCAGAAGTCCCAGGATTGGGAGACAACAAACCCAGGCCTTATGTATGATTCGTCCCAGCATGCAAATCCTTTACAAGTTAACATTGATGTCTCCCCATCAGTTTTAGTCCATCAGGGCTATTCTTCTACCCAGCAGAATGGACAAAGCAGAGATGCCCCTTTGATTGGAAAAACTATTTTCTCCCTGGGAGAAGGCTTGGAACTTGGGGATCTCCAAAATGCTGTTTCACCCCAACTCAAGTTCAAACTATGTGAGCAAAACACCAGCGTTTGTGCTGTGTGTTTCATGTTTTGTCTGCGTTTGTTGTTGTTGTTGTTGTGTTGCTGTTTGGATCTCTGAACTGTCATGAATCTCAGCAACGGCAAGGGATCCTTGTCGACGGTTANTTCCAGTGGGACTATGAAATCCGGCGACGCCGTCTCCGACCGGTTTCCGGCGGGTCTTCGGGTTCTGGTAGTGGATGATGATCCCACGTGCCTCATGATCCTTGAGAAGATGCTGCGCACATGTCTCTACGAAGTTACGAAATGCAATCGAGCAGAGACCGCACTCTCACTCCTCAGAGAGAACAGAAACGGGTTTGACATTGTTATAAGTGATGTGCATATGCCAGACATGGATGGATTTAAGCTTTTAGAGCACATTGGGTTGGAGATGGACCTTCCGGTTATTATGATGTCCGCAGATGATGGTAAGAGTGTTGTTATGAAGGGTGTAACACATGGTGCTTGTGATTACCTTATTAAACCTGTTCGCATAGAGGCCTTGAAGAACATATGGCAACACGTGGTTCGGAAGAAAAGGAATGAGTGGAAAGATACGGAGCAATCCGGTAGTGCCGAAGAAGGAGATCGGCAGCAGAAGGCATCTGATGATGCTGATTATTCTTCCTCTGCAAATGAAGGCAATTGGAGAAGCTCGAAAAAGAGAAGGGATGAGGATGAGGAAGCGGACGAGAGAGATGACACGTCCACACTAAAGAAGCCGCGGGTTGTTTGGTCTGTGGAGCTCCATCAACAGTTTGTAGCTGCTGTGGATCAACTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAACGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATACCGCTTGTATCTTCGAAGGCTGAGTGGAGTTTCTCAGCACCAGAATAACATGAACAACTCCTTTCTCAGCCCACAAGAGGCATCATTTGGGGCAATTTCATCAATCAATGGGATTGATCTTCAAACTCTTGCAGCTGCTGGCCAGCTCCCAGCACAAAGTCTAGCCACTCTTCAAGCAGCAGGACTTGGTAGGTCAACTGCAAAAGCAGGCGTATCAATGCCTCTCTTGGATCAAAGAAACCTTTTCAGTTTTGAAAACCCAAGGTTAAGATTTGGAGAAGGGCAACAGCAACATTTGAGTACTAGTAAACCAGTGAACCTACTTCATGGGATTCCTACCAACATGGAGCCGAAGCAGCTAGCCAATTTGCACCAGTCTACACAATCCCTTGGCAACTTGAATATGCGAGTCAATTCTTCCGCTACACAGAGCAACCCCTTATTGATGCAGATGGCACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAATACCGGTCCTCGGGTTCCCAGACTACCCAATCCCATGGGGCAGCCTACTGTATCGAATGGAATTTCTGATGGTTTTCTGGGCAGAAACGGGATAGCTGGTAGTAGTAACAGGCCACCTGCTTATAATCCTGTTCCACAGAGCTCTCCATTGTTGAGTTTTCCCTTGAATCATCATAACGCTGAAATGTCCGTCAGTAATTTCCCTCTAGGAAGCACTCCTGGTGTATCGAGTATCACAACCAAGGGCTCATTTCAAGAGGAAGTTACTTCAGGAATTAAAGGATCTGCTGGATTTCCAAGTTATGATATTTTTAATGAACTGCAGCATCAGAAGTCCCAGAATTGGGAGACAACAAATCCGGGTCTCATGTATGATTCATCCCAGCATGCAAATCCTTTACAAGGTAACATTGATGTCTCCCCATCAGGTCTAGTCCATCAGGGCTATTCTTCTACTCAACAGAATGGACAAAGCAGAGATACCCCTTTGATTGGAAAAACTATTTTCTCCCTGGGAGAAGGCTTGGAACAAGGTAATTTCCAAAATGCTGGTCAACACTTCAATCCCCTTGTTGATAATTCAATAAGGGTTAAGACTGAAAGAGTTCCTGATGCAAGCTCCCAGAATAACCTCTTCTCTGAGCATTATGGACAGGAGGATCTTATGAGTGCACTTTTGAAACAGCAAGAAGGCATTGGACCAGCTGATAATGAGTTTGATTTTGATGGGTATTCTCTGGACAACATTCCTGTCTAAGACAGACCATGGCCAGTGCTTTCTGATTGCAGTTAGTTACCAGTGTAAATAGTTGCTGTTACATATGCACCTTATCATTCTGCATATCATTCTGCAATTTGGAACTGAGTCTAAATTGTTCGACAGCAGAATTTGGTTGATGTCAAATATTCAGACTTCTGGCGTTAGCGTTCTATGATGCTTTAGTGCGGAAGCTCTAGATCTTTGATGTAGTTGATCAAGATTCAAGATGAATCAACTACAAACCTCAACTGCATATATGCACACAGGGCATGTGCAATTTTTGACTGCTATTTATAGCAAAATTCCTAGCAATCTTCTAATTTTATGGTGTTCTTGAAAGTATGTTGGCATAGGGAAAAATTGCAGAAGCAAGGTTTTGATACATCTTCAGACTCGTAGGAGCATTTTCTAACTTCAATAACAAATTATGAATTTTTTTCCCTCTTTTGTTCCTTTTTGCAATTTGACTTCCTTAAGCATGTAAATATTTCATCTGGTTGCTCAAGACATTTGGTCTGGCTATTCTTTTCTGGCTGTTTCTGTACTTTTGTGTTTCAGCTCTAGCTTATCTGCTCTGTTCATTATGTTATGCATTCTTTGTACATGAACTTGATTTGGTACTCATTTGGGATTTTATGGCAACTAGTCCTACCACTATGCAAGATAGTGATTATGGGGCTATGTGGTGTACTTGTTCAGTTGTCACTTTTCATGCTCTGCGAGAATTCCTGGGCAGTGGTTTCGGAGGGATAGTTCATTTCATCTCATTTCGTTTTGTTCTATTCTGTATTATTATATGTATTATTATATATCTAATTTCAGCTTCAAATTAACGCGAGGGACAGAAGGGAAGGAAAGCCTGAGTGAGAGTAGAGATTAATAAGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00082	305147	330674	-

Gene family

Gene family	subfamily
Transcription Factors Family	ARR-B

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000160 phosphorelay signal transduction system

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000082s00007607.1	PF00072.19	Response_reg	35	145	1.20E-17
Glyur000082s00007607.1	PF00249.26	Myb_DNA-binding	173	222	9.00E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.795
SRR1783600	control	31.764
SRR1783602	moderate drought stress	34.253
SRR1811619	moderate drought stress	34.283

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	57.572
DRR006520	Root Summer glycyrrhizin high producing strain	56.610
DRR006521	Root Winter glycyrrhizin high producing strain	20.329
DRR006522	Root Winter glycyrrhizin high producing strain	19.602
DRR006523	Root Summer glycyrrhizin low producing strain	107.930
DRR006524	Root Summer glycyrrhizin low producing strain	106.842
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.703
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.704

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.482
SRR2868004	Drought Stress (root)	44.645
SRR2967015	Control (root)	48.844

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.601
SRR9715740	Leaf	20.661
SRR9715741	Leaf	26.831
SRR9715739	Root	66.825
SRR9715742	Root	85.332
SRR9715743	Root	82.058

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.233
SRR8749028	MeJA induced 9h	18.432
SRR8749029	MeJA induced 9h	10.378
SRR8749030	Uninduced	15.872
SRR8749031	Uninduced	9.250
SRR8749032	Uninduced	8.362

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	59.527
SRR8400027	Control - Root	66.550