Gene detail

Gene detail information of Glyur000082s00007606

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G16120.1	COBRA-like protein-7 precursor
NR	XP_006600365.1	PREDICTED: COBRA-like protein 7-like [Glycine max]
Swissprot	tr\|Q8GZ17\|COBL7_ARATH	COBRA-like protein 7 (Precursor)
trEMBL	tr\|K7MJP5\|K7MJP5_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G03390.2}

Sequence

Transcript Sequence

>Glyur000082s00007606.1
CGACTATACGCACATTATTACAGCTTCTTCCAAGCTGTAGGTCCCTTTCTATTTTGTGAACGCGTTTCTGCACTNGCTTTCTCTCTCTCTCTCTCTTAAAAAAAGAAAAGAAACAAAACAAAAACACTTTTGTACTTACCATACGCACCCTCTCAGTGAGTTCAAAATTCGAATTTCATTTCAAACGAACTAAGCCCAAGCCCAGATCACCGATGATGGTCTCGCGACTCCCGAGCCACTGTTGCTTCAGCAGCATCGCCGTCTTAGCATTCATCTTGGTCGCAACGGCGTCGTTTGCGGAGGCTCAAACCTGCAACGGGATACTCCTCTCGTACTCCTACACCGGCGGAACGAGGCTCCCTCCGAACGTCTCCGACCCTAAGCAGCAACCGTACCGGTTCGAATCGACGCTGAGCGTGCTCAACAACGGCCTCGACGAACTCAAGTCTTGGAAGGTCTTCGTCGGGTTTCAGCACGACGAGTGGCTCGTCTCCGCCTCCAATGCTGTCCTCGCCGACGGCACTACCCTCCCCGCCGCCGTCGGAAACGGCACCGTCTTCGCCGGCTACCCCATGACAGATCTCAAAACCGCGGCGGAAACCGCCGGCGACTTGACTCAGATGCAGGCTCAGATTGACCTCGTCGGCACCGTCTTTGGGGTGGCGCCGCCCAGTGCTCCCTTGCCCTCCTCCATCAACCTCGCCAATGATGGCTTCGTCTGTCGCAAATCCACTGCTCAAGGGAAGAATGGTACTAATGTGTGTTGCACAAGAGATCCAAAGTTCAAAACAAACATTACTACCGATGAAGAGTTTCTGCCCCGTCAGAACGGTGATCTAACTATTATGTATGATGTGATCAGAACTTATGATTCCAATTACTGGGCAGAGGTTTCGATTGCAAACCATAACCCTCTTGGCCGGCTTGATAACTGGAGGTTGAGCTGGGACTGGATGAATGATGAGTTCATATTCTCAATGAAAGGGGCTTATCCTTCTGTTGTGGATGCCTCTGATTGTGTCTTTGGTAAGCAAGGCACATACTACAAGGATCTTGACTTTGCCAATGTATTGAATTGTGAAAAGAGGCCAACCATAATTGATCTCCCTCCTACTAAGTTCAACGATACTGACCTTGGGAAGATTCCTTCTTGCTGCCGGAATGGTACCATATTGCCACCTTCCATGGACCCTACCATGTCGGTTTCAAGGTTCCAAATGCAGGTCTTCAAAATGCCGCCGGCGCTTAATCGCTCCCAGCTTTCGCCACCGCAGAACTGGAAGATCAGTGGTACGCTCAACCCCGACTACAAATGTGGCCCTCCTGTTCGTGTGAGTCCCACCGAGAATCCGGATCCGTCAGGCTTGCCTTCTAACAAGACTGTAATGGCCAGTTGGCAGGTTGTGTGCAACATAACGACCACCAAGGGGACACCAAGTAAATGTTGCGTCTCATTTTCAGCCTATTACAATGAATCAGTTATTCCATGCAAAACATGTGCATGTGGATGCCCCAGGAACACAGGAAGAACATGTAGTACTACTTCACAGGCTATGTGGCTTCCACCGGAGTCACTCCTTGTTCCTTTTGAGAACCGGAGTGCCAAGGCGGTTGCCTGGGCTAGTCTGAAACATCTCCCAGTGCCAAACCCATTGCCCTGCAGTGATAACTGTGGTGTGAGCATCAACTGGCACTTATATACGGACTATAACAAAGGATGGAGTGCAAGGGTCACACTTTTTAATTGGGGTGAGACTAATTTTGCAGACTGGTTTGCTGCAGTGCAGATGGACAAAGCAGCTGCAGGTTTTGAGAAAATGTATTCATTCAACGCAAGCGTCCTAGATGGCGTGAATAATACAATTATTATGCAAGGTTTGGAGGGATTGAACTACCTTGTGGCAGAAGCAGATGGACCCAACCCTCTCAGAGATCCTAGGGTGCCTGGGAAACAACAGTCAGTAATCTCATTCACAAAGAAAACTACTCCTGGAATAAATGTAGCTCGTGGAGATGGGTTTCCCACTAAAGTCTTCTTCAATGGGGAGGAATGTTCTCTTCCTTCAGTGTATCCAACCAGTGGTGGTTTCAGAAAGGATTTTTCCTGGGCTACTTCAATGCTTCTAGCACTGTTGCTGGTCGTCTTGATGCAGTAATAGTGGCTATGCTTGATTTTAGCTCTGGCTTGCTGTTGTCCTGATACAGGATTTGATTCATATATTGACCTCATCACAGAAACAAAGTAAAGAAACGTAAGTGGGGTAAGTCGTGCTGTTGTAACATTCATGCTGTGTGTCAGGTTTGGATGCTGTGGCAATCCTTGTTCAATTGATATGATTCTTTCGAGCATTGTTATAGTACAGAAGATTGTAGATTTGTGTTAGATGATAGAAATATATTCCTTTTTCCATTATAAGTTTTGTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGGGTAATTCTGATGTAGGCATTATCTATCACAGACGCTCAAATTATTATTTGACAAGTGCAAGATTGTAGGCAGTAAGCACCACGATAGAAATGCATCTATGATTTAAAAATGTTGTCAATGATAATTTGAGTGCATAAAAAAAGAAGGTAAGTAAATAAANAATTTCTCTTTCTTGATTGGGGATGAAAGCATAGATAGCATTGACGAGTGGAATTACTGATCATAGTNATTGGGATACTGACAAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00082	300987	303890	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0010215 cellulose microfibril organization

GO:0016049 cell growth

cellular_component
GO:0031225 anchored component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000082s00007606.1	PF04833.10	COBRA	223	402	1.70E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.649
SRR1783600	control	28.854
SRR1783602	moderate drought stress	11.183
SRR1811619	moderate drought stress	11.035

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	66.747
DRR006520	Root Summer glycyrrhizin high producing strain	65.721
DRR006521	Root Winter glycyrrhizin high producing strain	3.956
DRR006522	Root Winter glycyrrhizin high producing strain	3.900
DRR006523	Root Summer glycyrrhizin low producing strain	140.961
DRR006524	Root Summer glycyrrhizin low producing strain	141.480
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.538
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.414

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.541
SRR2868004	Drought Stress (root)	21.619
SRR2967015	Control (root)	30.906

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.999
SRR9715740	Leaf	18.258
SRR9715741	Leaf	32.797
SRR9715739	Root	118.454
SRR9715742	Root	165.250
SRR9715743	Root	155.479

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.021
SRR8749028	MeJA induced 9h	57.752
SRR8749029	MeJA induced 9h	41.610
SRR8749030	Uninduced	34.202
SRR8749031	Uninduced	21.085
SRR8749032	Uninduced	32.611

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.020
SRR8400027	Control - Root	45.106