Gene detail

Gene detail information of Glyur000082s00007593

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24220.2	7.00E-76	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004508264.1	0	PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Cicer arietinum]
COG	YP_002362430.1	4.00E-62	NAD-dependent epimerase/dehydratase [Methylocella silvestris BL2]
Swissprot	tr\|Q9STX2\|VEP1_ARATH	2.00E-92	3-oxo-Delta(4,5)-steroid 5-beta-reductase
trEMBL	tr\|G7JMD3\|G7JMD3_MEDTR	0	3-oxo-delta(4,5)-steroid 5-beta-reductase-like protein {ECO:0000313\|EMBL:AES89376.1}

Sequence

Transcript Sequence

>Glyur000082s00007593.1
TTCGTATTTAATGAAATCGACATTTNATCGTATCAAGAGCAATTAATTAATCATGCAAAATAAGTATATAATATAGGTGACATCTATATCAATGCTATCCACATGCTTAGTGGCCACTTCATCATGATGGTGAACTTTCCAGGCTTCACCNCCATAGATGTAACCTTGAATATAATATACATATATCAATGNTATCCACATGCTTAGTGGCCCATGATGGTGAACTTTTCAGGCTTCACCTCCATAGATGTAACCAATATATGCTCTATATCCCCGCTCCTGTTTGTGGCGTTGATATCAATTCAACTGTGAATTGTGATGGAGCAGCACCACCACGCTTCGGTAGCACTAGTGGTTGGAGTCACAGGCATGGCTGGGCTAAGCATAGCCAAAGCCTTGAAGCAGCCCAATTGTCTCGGAGGCCCATGGAAAGTTTACGGCGCGGCCCGCCGGCCCACACCCTCCTGTTTCCCTCCGTCCATCGTCGACACCTTCATCACCTTCGACGCCGTTGACTCAACCGACACACGCGCCAAGCTATTACCCATCGCTCACGAGGTCACACACCTATTCTGGGTCACCTTCCAAATTGTCGTAGAAGAAGAAATCAACGTAACTGTCAACAGAGCCATGCTTCTCAACGTTCTCAACGCCCTNAAGTCTTCCCCAACTTCCCGGCTCACCCACGTCACGGTCCAAACCGGCACCAAACACTACATGGGCCCAATCAACGACCCGGCCCGGTCCACCCAACTCCTCTGCCACGACCACGAGCCACCCTTCCACGAGGAAATGTTGCGACTCAATTACCCGAACTTTTACTACGCGCTGGAGGATCTCGTTGCATCCTACGCGCCTTCCTTTACGTACTCGATACACCGCTCGTCTATCATAATAGGCGCATCTCCGAGGACTAAACACAACGCGCTGCTGATCCTCGCTACTTACGCTGCCGTNTGCCGTTACATTGGGTTGCCGTTTCGGTACCCGGGGAGCATGTACACGTGGGAGCATTTCTGCGACATGACCGATGCGCGCGTGTTGGCGAAACAGCACGTGTGGGCAGCGGTTACTGAGAATGCGAAGAACCAGGCCTTCAATTGCACAAATGGCGACGTTTTCACGTGGAAGAGCGCGTGGAGGCTGTTTAGTGAGCTTTTCGACGTTGAATTTGTGCCGTTGGATGAGAACCAAGAAGGGTTTGATCTTGTGGAGTTGATGCGTGACAAGGGTGAGGTTTGGGAACAGATTGTGGAGAAATACGGGCTTCACAAAACAAAATTGGAGGAAATTGCTTGCTATGAAGCCATCGTGCCGGTGCTACGGTTCGAGTTCCAACATGTGTCTAGTATGAACAAGAACAGGGAATGTGGGTTTTTTGGGTTCGCCGACACGTTTAAGAGTATCAGATTTTGGGTGGCGAAGCTGAGGGAGATGAAACTCATACCTTCGTACCAACACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00082	245672	247135	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.022
SRR1783600	control	7.005
SRR1783602	moderate drought stress	19.250
SRR1811619	moderate drought stress	19.166

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.172
DRR006520	Root Summer glycyrrhizin high producing strain	19.004
DRR006521	Root Winter glycyrrhizin high producing strain	0.229
DRR006522	Root Winter glycyrrhizin high producing strain	0.296
DRR006523	Root Summer glycyrrhizin low producing strain	7.649
DRR006524	Root Summer glycyrrhizin low producing strain	7.779
DRR006525	Leaf Summer glycyrrhizin high producing strain	55.490
DRR006526	Leaf Summer glycyrrhizin high producing strain	55.077

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	118.759
SRR2868004	Drought Stress (root)	179.768
SRR2967015	Control (root)	132.568

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	126.386
SRR9715740	Leaf	150.875
SRR9715741	Leaf	147.812
SRR9715739	Root	18.186
SRR9715742	Root	18.775
SRR9715743	Root	19.826

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.591
SRR8749028	MeJA induced 9h	23.741
SRR8749029	MeJA induced 9h	11.922
SRR8749030	Uninduced	1.019
SRR8749031	Uninduced	2.449
SRR8749032	Uninduced	8.253

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.532
SRR8400027	Control - Root	25.867