Gene detail

Gene detail information of Glyur000082s00007588.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02080.1	8.00E-103	secretion-associated RAS super family 2
NR	XP_006419420.1	1.20E-180	hypothetical protein CICLE_v10005438mg [Citrus clementina]
COG	YP_001737337.1	1.00E-18	small GTP-binding protein [Candidatus Korarchaeum cryptofilum OPF8]
Swissprot	tr\|O04834\|SAR1A_ARATH	2.00E-127	GTP-binding protein SAR1A
trEMBL	tr\|V4S1T8\|V4S1T8_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR32660.1}

Sequence

Transcript Sequence

>Glyur000082s00007588.1
GGGGTTGTTATTATATGCCTAAAAAGACAATCTACGACTTCNGTGGGATCTAGGTAGGTGGTGCCCTCTCATTCCTCAGCCATCGATCTGGGACTTCCTTCCCCCAGATTCAAACTCACTCTGCAATTCCCTTCACCTTTTGGTTTGGATCTGAACACATAAACCCAAACATGTTCCTCTTTGACTGGTTCTATGGCATTCTAGCTTCCCTCGGTCTCTGGCAAAAAGAAGCCAAGATTCTCTTCCTCGGTCTCGACAATGCCGGCAAAACCACCCTCCTTCATATGCTCAAAGACGAGAGACTAGTTCAGCACCAGCCAACCCAACACCCCACTTCAGAGGAATTGAGCATTGGGAAGATCAAGTTTAAGGCTTTTGATTTGGGTGGTCATCAAGTTGCCCGCAGAGTCTGGAGAGACTATTATGCAAAGGTAGATGCAGTAGTTTATCTGGTTGATGCATTTGACAAAGAGAGGTTTGCAGAATCAAAGAAGGAGCTTGATTCCTTGCTTTCAGATGAAGCATTGGCAAATGTTCCATTTCTTGTGCTAGGCAACAAGATTGACATTCCATACGCCGCTTCAGAAGAAGAGCTACGATATCATCTCGGCCTGACCAATTTTACCACAGGGAAGGGAAAGGTCAACCTTAACGAGTCCAACCTTCGGCCTCTCGAAGTGTTCATGTGTAGCATTGTCCGCAAGATGGGATATGGTGAAGGCTTCCGCATCATTTTTACTCCTTTCCTTGGTCAAGTAGCACTGTCTGCAGTTACTTCAGAAGAGAATTCCGGCGACCTCGACGGCGGCGGAGATTTTTGCTGTTTAATTTTCCCACGACTTCTGAAACTCTCCGAGAAAAGAGAAATGTTTCTCGTTGATTGGTTCTATGGAATTCTGGCGACGCTGGGTCTGTGGCAAAAGGAGGCGAAGATTCTATTCCTAGGGTTAGATAATGCTGGGAAGACCACCTTGCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCATCAACCTACTCAGTATCCAACGTCAGAGGANTTGAGTATTGGGAAGATAAAATTCAAGGCTTTTGACTTGGGTGGCCACCGGATTGCTCGTAGGGTCTGGAGGGACTATTACACTCAGGTGGATGCTGTAGTCTACCTGGTTGATGCATTTGACAAGGAAAGGTTTTCGGAATCAAAGAAGGAGCTGGATGCACTTCTTTCTGATGAANCACTAGTAAATGTGCCTTTCCTTATCTTAGGAAACAAGATCGACATACCTTATGCCGCGTCAGAGGACGAGTTGCGTTACAATATGGGCCTGTCTAACTTCACTACAGGCAAGGGAAAGGTTAATCTTGCTGACTCCAATGTCCGTCCTTTGGAGGTGTTCATGTGCAGCATTGTCCGCAAGATGGGATATGGAGAAGGCTTTCAGTGGCTCTCTCAGTACATTAAATAAATAGGCAACAAGTAGTGTGCTTGATGAATATGACTATGCTGATGCAGTCTCAACATTAGCATTGTAGTTTTAGACGTCTATGCTCATGTAAATTGGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00082	211772	217530	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K07953	SAR1	EC:3.6.5.-	Protein processing in endoplasmic reticulum	map04141
			Legionellosis	map05134

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0007264 small GTPase mediated signal transduction

cellular_component
GO:0005622 intracellular

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000082s00007588.1	PF00025.16	Arf	8	188	9.90E-63
Glyur000082s00007588.1	PF00025.16	Arf	240	424	2.60E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	72.779
SRR1783600	control	73.096
SRR1783602	moderate drought stress	51.944
SRR1811619	moderate drought stress	51.896

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	95.204
DRR006520	Root Summer glycyrrhizin high producing strain	95.861
DRR006521	Root Winter glycyrrhizin high producing strain	55.970
DRR006522	Root Winter glycyrrhizin high producing strain	55.940
DRR006523	Root Summer glycyrrhizin low producing strain	75.400
DRR006524	Root Summer glycyrrhizin low producing strain	74.522
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.115
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.108

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	119.763
SRR2868004	Drought Stress (root)	92.916
SRR2967015	Control (root)	98.943

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.123
SRR9715740	Leaf	49.979
SRR9715741	Leaf	62.132
SRR9715739	Root	109.361
SRR9715742	Root	67.104
SRR9715743	Root	75.775

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	59.528
SRR8749028	MeJA induced 9h	60.409
SRR8749029	MeJA induced 9h	65.731
SRR8749030	Uninduced	94.798
SRR8749031	Uninduced	80.994
SRR8749032	Uninduced	88.325

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	126.815
SRR8400027	Control - Root	111.248