Gene detail information of Glyur000082s00007587 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06680.1 | 4.00E-25 | Ribosomal L29e protein family |
| NR | XP_003529537.1 | 6.36E-36 | PREDICTED: 60S ribosomal protein L29-1-like [Glycine max] |
| Swissprot | tr|Q9M7X7|RL291_ARATH | 4.00E-32 | 60S ribosomal protein L29-1 |
| trEMBL | tr|I1MRP4|I1MRP4_SOYBN | 2.00E-36 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G37060.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00082 | 209209 | 210103 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000082s00007587.1 | PF01779.12 | Ribosomal_L29e | 3 | 42 | 8.10E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1473.701 |
| SRR1783600 | control | 1476.828 |
| SRR1783602 | moderate drought stress | 1372.465 |
| SRR1811619 | moderate drought stress | 1365.916 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1444.237 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1428.542 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 773.558 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 752.290 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 941.006 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 936.757 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 330.965 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 328.769 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 559.224 |
| SRR2868004 | Drought Stress (root) | 414.112 |
| SRR2967015 | Control (root) | 397.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 239.391 |
| SRR9715740 | Leaf | 277.280 |
| SRR9715741 | Leaf | 290.899 |
| SRR9715739 | Root | 877.297 |
| SRR9715742 | Root | 607.923 |
| SRR9715743 | Root | 601.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 385.499 |
| SRR8749028 | MeJA induced 9h | 147.355 |
| SRR8749029 | MeJA induced 9h | 307.561 |
| SRR8749030 | Uninduced | 87.646 |
| SRR8749031 | Uninduced | 61.452 |
| SRR8749032 | Uninduced | 115.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 794.749 |
| SRR8400027 | Control - Root | 836.522 |