Gene detail information of Glyur000082s00007582 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16980.1 | 7.00E-50 | RNA polymerases M/15 Kd subunit |
| NR | XP_010268008.1 | 1.86E-64 | PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera] |
| COG | YP_001435441.1 | 6.00E-09 | DNA-directed RNA polymerase subunit M [Ignicoccus hospitalis KIN4/I] |
| Swissprot | tr|Q6NLH0|RPB9A_ARATH | 3.00E-63 | DNA-directed RNA polymerases II, IV and V subunit 9A |
| trEMBL | tr|C6SXF5|C6SXF5_SOYBN | 9.00E-65 | DNA-directed RNA polymerase subunit {ECO:0000256|PIRNR:PIRNR005586, ECO:0000256|RuleBase:RU004351} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00082 | 157914 | 160508 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000082s00007582.1 | PF02150.11 | RNA_POL_M_15KD | 4 | 37 | 8.40E-11 |
| Glyur000082s00007582.1 | PF01096.13 | TFIIS_C | 75 | 113 | 1.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.074 |
| SRR1783600 | control | 6.068 |
| SRR1783602 | moderate drought stress | 3.753 |
| SRR1811619 | moderate drought stress | 3.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.962 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.709 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.178 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.414 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.896 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.898 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.603 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.914 |
| SRR2868004 | Drought Stress (root) | 14.802 |
| SRR2967015 | Control (root) | 12.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.969 |
| SRR9715740 | Leaf | 3.062 |
| SRR9715741 | Leaf | 1.273 |
| SRR9715739 | Root | 3.239 |
| SRR9715742 | Root | 1.320 |
| SRR9715743 | Root | 1.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 39.843 |
| SRR8749028 | MeJA induced 9h | 13.658 |
| SRR8749029 | MeJA induced 9h | 24.674 |
| SRR8749030 | Uninduced | 10.043 |
| SRR8749031 | Uninduced | 6.862 |
| SRR8749032 | Uninduced | 12.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.610 |
| SRR8400027 | Control - Root | 12.195 |