Gene detail information of Glyur000082s00007576.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16990.1 | 5.00E-78 | Haem oxygenase-like, multi-helical |
| NR | XP_003609761.1 | 5.05E-142 | Seed maturation protein PM36 [Medicago truncatula] |
| COG | YP_007079140.1 | 9.00E-34 | transcription activator [Pleurocapsa sp. PCC 7327] |
| Swissprot | tr|Q9SWB6|PM36_SOYBN | 1.00E-138 | Seed maturation protein PM36 |
| trEMBL | tr|G7JMU3|G7JMU3_MEDTR | 2.00E-142 | Seed maturation PM36-like protein {ECO:0000313|EMBL:AES91958.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00082 | 145318 | 146893 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K20896 | TENA_E | EC:3.5.1.- 3.5.99.- | Thiamine metabolism | map00730 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000082s00007576.1 | PF03070.11 | TENA_THI-4 | 23 | 230 | 5.30E-44 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.203 |
| SRR1783600 | control | 14.971 |
| SRR1783602 | moderate drought stress | 21.372 |
| SRR1811619 | moderate drought stress | 20.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.635 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.981 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.190 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.301 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.182 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.435 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.261 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.230 |
| SRR2868004 | Drought Stress (root) | 7.861 |
| SRR2967015 | Control (root) | 7.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.690 |
| SRR9715740 | Leaf | 7.859 |
| SRR9715741 | Leaf | 10.505 |
| SRR9715739 | Root | 4.926 |
| SRR9715742 | Root | 17.406 |
| SRR9715743 | Root | 13.083 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.885 |
| SRR8749028 | MeJA induced 9h | 3.434 |
| SRR8749029 | MeJA induced 9h | 3.631 |
| SRR8749030 | Uninduced | 1.151 |
| SRR8749031 | Uninduced | 0.195 |
| SRR8749032 | Uninduced | 0.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.287 |
| SRR8400027 | Control - Root | 32.082 |