Gene detail

Gene detail information of Glyur000082s00007567

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G17040.1	0	high chlorophyll fluorescent 107
NR	AES91969.2	0	PsbB mRNA maturation factor Mbb1 [Medicago truncatula]
COG	YP_001789527.1	3.00E-14	hypothetical protein Lcho_0487 [Leptothrix cholodnii SP-6]
Swissprot	tr\|Q9FNS4\|MBB1_CHLRE	7.00E-83	PsbB mRNA maturation factor Mbb1, chloroplastic (Precursor)
trEMBL	tr\|G7JNW2\|G7JNW2_MEDTR	0	PsbB mRNA maturation factor Mbb1 {ECO:0000313\|EMBL:AES91969.2}

Sequence

Transcript Sequence

>Glyur000082s00007567.1
CCAAGTTTTCATGAGTCNGTGGAGGGTTATCATAGTAATTCTACATGCTATCTTCTTCCTCCACATGTGGTTTGTAGTAGGAAACAGTTTAGTTCGTTAACCAGAAATGAACACGCTCCCTTCTCCTCCACCTTCTTCTTCTTCTTCTTCCTCTCCCAATTACACTCTCTCCACTCAGCCCAAAAAACCCAACTACCTCTTCAAGTTCACCCTCAAAGTACCCATTTTACCCCTCCACTCCTCCTCTTCCCATTTCACAGCACCTGCACCATGTTGCTCTCTCAGGGACTCATCATCTTCCCCCTCCTCATCAACCTCGGTGCTGGACAAAAATGCCCCTTCCTCCGAACAGAGTTCCCGCAACGAAGTCCCACCGAAAGACTCAAACTCTGAGGGAGCGCTCGTGGTTCGCCGGCCGGTGAAGGAGTTTTCCGGCGAAGACTCCGGCGAGGAGGAACAGAGGAAGGAAACAGAGGAGGATGAACNGGAGGCTTCCGCTATCGATGCCGGGCTCACGAGATTCGCAAAGAAGATGCCGATGTTTGAACCGGAGAGGGTCGATTCAGACTCCAAAGAGAAGCCCCTGACCGTGAATTTGGACTTGGCATTATATAGGGCGAAGGTTTTGGCTCGAAGCTTTCGTTATGAAGAAGCAGAGGCAATACTTCAGAAGTGTATAAGCTATTGGCCTGAAGATGGTAGACCTTATGTGGCACTTGGGAAAATTTTGAGCAAGCAATCAAAAACGGGTCAAGCCAGAGAGATATACGAGAAGGGTTGCCAGGCTACTCAGGGTGAAAATGCCTACATTTGGCAGTGCTGGGCTGTTCTTGAAAAGAGAGTAGGGAATGTCAGGAGAGCAAGAGAGCTTTTCGATGCTGCCACGGTTGCTGATAAGAAGCATGTTGCTGCTTGGCATGGGTGGGCAGTTCTGGAGTTAAAGCAAGGAAATATAAAGAAGGCAAGNAATCTGCTTTCCAGAGGTCTTGAATATTGTGGACAGAATGAGTACATATACCAAACACTTGCATTGCTTGAAGCTAGAGCAAATAGATATCAACAGGCTCGGTATTTATTCAGTCAGGCCACAAAGTGTAACCCTAACAGCTGTGCCAGTTGGCTTGCTTGGGCTCAAATGGAGGTGGAGCAGGAAAACTACCGTGCTGCTAGGCAATTGTTTGAGAAAGCAGTGCAGGCAAGTCCTAAAAATAGGTTTGCTTGGCATGTATGGGGCATTTTTGAAGCGAACACAGGAAACATTGACAAGGGAAGAAAACTTCTGAAGATAGGCCATGCTCTAAATCCGAGGGATGCTGTTCTCCTTCAGTCTCTTGCATTATTAGAATACAAACACTCAACTGCAAACCGTGCTCGAGTTTTGTTCAGGAGAGCATCTGAATTGGATCCTAAGCATCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAAGGGAACTTGAATACAGCTAGAGAATTATACAAAAAAGCTTTATCAATTGATCCAAACAGTGAAAGTGCTGCCAGGTGTCTCCAGGCTTGGGGTGTTCTGGAGCAGAGGGTTGGCAATCTCTCAGCTGCCCGTAGATTATTTAGATCCTCACTGAATATAAATTCTCAGAGTTATGTGACGTGGATGACTTGGGCATCACTGGAGGAAGATCAAGGAAATTCTGTGCGTGCTGAAGAGATTCGTAACCTTTATTTCCAGCAGCGCACGGAAGTGGTGGATGATGCTTCATGGGTTATGGGGTTCTTAGATATTTTAGACCCTGCCATTGACAGTTTGAAGAGACTCCTGAAGCTGGACCCGAATTCATACAGCATGCCACCGGATTCCTTGAGAAGTCTTACCAGAACAAATAAAAACACGGTTGATTTCTCCGGTGGCAATGATGAGGATGATGTGGACGGTGAAAGTGGGTTTGATTTGGATGCTTTCATTATGGAAAGGTTGTCCTTAGATTCGTCCAAGCTGGAAGTTCAGTTGGAAACACCAAAAAACCCTTATATGAAAAAAATTATTTCTCCAAGAAGGATATGGCAATCAAATAATAGAAAAACAATGATTCGTTAACACCCATTCATTTTCAACACTCATCCAACATCCCTCTTCTTATCACATCACCAATCTATCACCCCTATCTATGTCAAGGTGTTTCATGGCATATGGGATGTCCAAGAAACATTTTTATAATANAATTGCCAAAGTGTAAGTTCACAGTACAGGGAATGTAGTTCAGGGTTGGTGCTGTCCAAAAAAAAATGTAGTTCAGGGTTGGACCTTGTGTGGTACAGATGGGTGGTCTTGTAAAATTATCTTTGAATAGTTGAGTTGGGCTATTGGGCCCTGTTCTGTTTGTTTCCGCTGTTCTACAGCGCTGGACCAAAAATAATAATATGACCATACTCCATATAGNATGAGAGATGTCTTTGTCTTGGCCTTGTGTTGAAAACAGAGTAAGAAATAACTTTCAGTGAAAACAAAGTATACTGATGAAAGACAGTATTGCGTTGTCTTCAAGGGAAAAACCTGTTGTCCTGTTCTAGATGAATTTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00082	71299	75899	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006396 RNA processing

cellular_component
GO:0005622 intracellular

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000082s00007567.1	PF07719.12	TPR_2	303	333	0.0078
Glyur000082s00007567.1	PF14559.1	TPR_19	347	407	7.30E-06
Glyur000082s00007567.1	PF07719.12	TPR_2	439	469	3.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.291
SRR1783600	control	1.294
SRR1783602	moderate drought stress	1.388
SRR1811619	moderate drought stress	1.400

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.929
DRR006520	Root Summer glycyrrhizin high producing strain	0.923
DRR006521	Root Winter glycyrrhizin high producing strain	0.821
DRR006522	Root Winter glycyrrhizin high producing strain	0.791
DRR006523	Root Summer glycyrrhizin low producing strain	1.757
DRR006524	Root Summer glycyrrhizin low producing strain	1.709
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.389
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.051

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.828
SRR2868004	Drought Stress (root)	9.035
SRR2967015	Control (root)	5.681

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.952
SRR9715740	Leaf	52.209
SRR9715741	Leaf	43.117
SRR9715739	Root	0.803
SRR9715742	Root	1.282
SRR9715743	Root	1.590

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.268
SRR8749028	MeJA induced 9h	3.133
SRR8749029	MeJA induced 9h	1.445
SRR8749030	Uninduced	1.049
SRR8749031	Uninduced	0.238
SRR8749032	Uninduced	0.353

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.114
SRR8400027	Control - Root	4.854