Gene detail information of Glyur000082s00007566 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58040.1 | 3.00E-24 | homolog of yeast FIP1 [V] |
| NR | XP_003609773.1 | 0 | Pre-mRNA polyadenylation factor fip1 [Medicago truncatula] |
| Swissprot | tr|F4KDH9|FIPS5_ARATH | 1.00E-26 | FIP1[V]-like protein {ECO:0000303|PubMed:16282318} |
| trEMBL | tr|G7JNW3|G7JNW3_MEDTR | 0 | Fip1 motif protein {ECO:0000313|EMBL:AES91970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00082 | 61533 | 69126 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000082s00007566.1 | PF05182.8 | Fip1 | 181 | 220 | 2.10E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.203 |
| SRR1783600 | control | 6.223 |
| SRR1783602 | moderate drought stress | 6.907 |
| SRR1811619 | moderate drought stress | 6.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.708 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.683 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.824 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.706 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.818 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.596 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.636 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.615 |
| SRR2868004 | Drought Stress (root) | 5.032 |
| SRR2967015 | Control (root) | 4.399 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.747 |
| SRR9715740 | Leaf | 4.237 |
| SRR9715741 | Leaf | 2.687 |
| SRR9715739 | Root | 0.429 |
| SRR9715742 | Root | 3.751 |
| SRR9715743 | Root | 3.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.242 |
| SRR8749028 | MeJA induced 9h | 12.412 |
| SRR8749029 | MeJA induced 9h | 7.092 |
| SRR8749030 | Uninduced | 1.056 |
| SRR8749031 | Uninduced | 0.609 |
| SRR8749032 | Uninduced | 1.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.618 |
| SRR8400027 | Control - Root | 6.066 |