Gene detail

Gene detail information of Glyur000082s00007563.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49470.3	0	PAS domain-containing protein tyrosine kinase family protein
NR	XP_003529520.1	0	PREDICTED: probable serine/threonine-protein kinase DDB_G0282963-like isoform X1 [Glycine max]
COG	YP_001958461.1	3.00E-44	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	2.00E-110	Serine/threonine-protein kinase EDR1
trEMBL	tr\|I1KMQ9\|I1KMQ9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G36830.1}

Sequence

Transcript Sequence

>Glyur000082s00007563.1
ATGGGAAGCACATCAAGAGATGATGTTGTGAAGAAGATCCAAGAGCTGGAAGAGGGTCACGCTCACTTGCAGCAAGAAATGTCAAAGCTTAAGCTTTGTGATGGAAGAGGGAAGCAGCAGCAGCAGCACCAACGCCAGAGGTCTCACTCGGTGTCACCACAGCGTTCCAGATTGGGTGTGCCTCCTAAGACCAGAAACGATGCGTTTAACAACAACAACAACAATAGGGGCTCTTGTTCCTTCAAGCACTCCTCACCTCTTCAGAGGGAGAGTCGTGATGGTGGTGGTGAACCTCAAAATCAAAATCGTGCACAAGGAGAAGCACGTTTTGGCCCTTCTGCTGTGAATTTCACTGAAGGCCAGTATCTCAATATTTTGCAGTCAATGGGACAGAACCGTAGTGCTGAAAATCTATATGGTTATGCAGCAGAGGAAGCCCTGGGACAGGATGGGGTTGAGCTGCTTGTAGACCCTAGTGATTGGGGATTGGCCTTTGATACATTGAACCGTGTCATGTTGGGAGAGAGATGGACCGGGCAATTCCCTGTCAGGAATAAGATGGGGGAGAAGTTTTTAGCTGTAACAACAGATACACCTTTTCATGATGATGATGGGAGCTTAGTTGGGNTTATCTGTGTCTCGAGTGATTTGCGTCCCTTTCTTGAAGTCAGAGTTCCGTTCTCAGGTGTAACAAACGCTGAATCGGATTCAGGTTCCGTCCGNCCTAGAAGTGGCATTACAAATAAACTTGGCCTTGACTCTCAACAACAACCACTTCAAGTTGCCCTGGCATCAAGAATTTCAAATTTGGCATCCAGGGTGAGTAACAAAGTTAAGTTGAGGATTTGGACGGGAGAAAATAATGTGGATCGCGACGGTAGGAGTGGAGAAAGTCATCATTCTGAACATGGTTTCTCAGAATCTGTTCTTTCAGACCACAGAGAAGATGCTAATTCAAGTGGAGCTAGCACACCTAGAGGGGATTTGCCACATTCCCCTTTTGGTGTGTTTTCTCAAGTTGAAGAAAAATCCCAAGGGAAAACTTTGAGGGACTCTGGTGATGAGAGTGAAGGAAAGCCTATTCACAGAATTATACCTACTAAGGCTGATACCTGGATTCAAAAGAAAACATTATCATGGCCATGGAGAACAAATGAACGAGAACGATCAGAGGCGAGGAACGTTCGTGGTGCTGGGCCATGGAGGCNGAATGATCAAGAGAATAATGGGCCGGTTAATCAGAATAATCTTTCTTCTGGCTTGAAGCAAGAAAGCCAGGTAGGCGAAAGTAATCGTCCTAGTAACAATGAGGCTCCAGGATCCTGGTCTTCCTTTAATGTTAACAGCACAAGTAGTGCCAGTAGCTGTGGGAGTTCTGGCAGTTGTGCTGTCAGTAATAAGGTGGATATGGACACTGATTGCCTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGACAAGGTTCTTGTGGAACTGTATACCATGCTCTGTGGTATGGATCAGATGTTGCTGTCAAGGTTTTCTCAAGGCAAGAATATTCAGAGGATGTGATACTGTCCTTCAGACAAGAGGTATCTGTCATGAAAAGACTTAGACACCCAAATATTCTTCTCTTTATGGGGGCAGTGACTTCACCTCAACGTCTCTGCATTGTGACAGAGTTTCTCCCACGCGGAAGCTTGTGTCGCTTGTTACACAGAAACACACCTAAACTTGATTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCACGAGGGGTAAATTATCTTCATCATTATAACCCACCTATCATCCATAGAGATTTGAAGTCTTCAAACCTTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCATGAAACATTTCTCACAACCAGGACAGGAAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCATCCGATGAGAAGTGCGCTTTGAATGTGTTTTTGCTGCATTTTGGGAACATCAGGTCTGATGTATACAGCTTTGGGGTTATATTATGGGAACTTGCAACTGAAAAGATCCCTTGGGATAATCTCAACTCAATGCAGGTGATTGGAGCTGTCGGGTTCATGAATCAGCGGCTAGAAATTCCAAAAGATGTTGATCCGCAGTGGGCTTCGATAATTGAGAGCTGTTGGCATAGTGATCCAACTAGCCGACCGACATTCCAGGAACTGCTCGAAAGGCTTAAAGAGCTGCAAAAACGTTACGCCATTCAGTTTCAGGCGGTGCGATCATCTGCTGGTGGGGAAAGCGCCCAAAAGGAGTCCTAGACCCAACCTTGGAGCTATTCTTTCTTTTTGTCACTTGTGGCTGATGCATTTATTTATGCATCTATTTTGTCACAGTTCTTGGGGAGTAGATGAATTGGTACAANCAGCTGGTCTTGGAGCCATGTAGAATAGCTGGTCTGAGACTGAGTTTTTCATTAACATTTGGGATAAAATGATTCAAAAAAAGGTCTTTGTGGTGATTGGGTTAGTCATTTTAGTGACATCATAAAGTTTCTTCAATTTATTGGTGGTGATGTGTCTTTGATGTACTGTCAATCGGATTGGTTACCAGTTACCACCCACATTGTAATTTTTTCTATGCAAAATGTTTGCACCACTATTTAAAAGTTGTACAGAATGTAGTGACTACATAGATTAGAATCAGAAAATTTCGTCTGCTTTAGATTTGTTTGTTATGGTTGGATCTTTATCACTACCCACTTGGAGTAAAAGGGCNGCTCAGCACGTCAAATTTTTGAGCGGATGCTATGTTACAAAGAAATTATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00082	45984	51842	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0007165 signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0004871 signal transducer activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000082s00007563.1	PF13426.1	PAS_9	132	217	2.20E-09
Glyur000082s00007563.1	PF07714.12	Pkinase_Tyr	484	750	7.10E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.510
SRR1783600	control	11.556
SRR1783602	moderate drought stress	17.243
SRR1811619	moderate drought stress	17.147

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.118
DRR006520	Root Summer glycyrrhizin high producing strain	14.392
DRR006521	Root Winter glycyrrhizin high producing strain	8.793
DRR006522	Root Winter glycyrrhizin high producing strain	8.715
DRR006523	Root Summer glycyrrhizin low producing strain	32.060
DRR006524	Root Summer glycyrrhizin low producing strain	32.327
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.064
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.253

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.193
SRR2868004	Drought Stress (root)	29.795
SRR2967015	Control (root)	33.688

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.375
SRR9715740	Leaf	18.271
SRR9715741	Leaf	22.174
SRR9715739	Root	6.035
SRR9715742	Root	18.280
SRR9715743	Root	17.019

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.156
SRR8749028	MeJA induced 9h	29.426
SRR8749029	MeJA induced 9h	12.612
SRR8749030	Uninduced	15.729
SRR8749031	Uninduced	17.327
SRR8749032	Uninduced	10.466

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.757
SRR8400027	Control - Root	22.938