Gene detail

Gene detail information of Glyur000082s00007557.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06600.1	4.00E-77	ubiquitin-specific protease 12
NR	KHN37118.1	1.36E-116	Ubiquitin carboxyl-terminal hydrolase 13 [Glycine soja]
Swissprot	tr\|Q9FPT1\|UBP12_ARATH	9.00E-87	Ubiquitin carboxyl-terminal hydrolase 12
trEMBL	tr\|I1NE40\|I1NE40_SOYBN	6.00E-119	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G11330.1}

Sequence

Transcript Sequence

>Glyur000082s00007557.1
AAAATAAAAGCAATAGATAATAGATAGATAATGAGTAAGAGATAAATAGATAGATATTATCATCTTACATCCAAAAATAGTCCCTCTTGTTTCCTGCAACTTCCTCACATGGATAAAGATTCACATTTCAATTCTTCTAGAACCATCAACAACAATGGAATCCAAGATTCTTCACTGAACCCCTCAAGTCACTACTACATTCATCACAGCGATGGACCTTTTTCGCTTGGTGTAGCACCAACCCTAGATGGTGCGAACTATCATTTCTGGTCTCTATCGATGCGAAGAGCGTTGATAGTGAAGAATAAGTTCAAATTTGTGGACGGAAGCATCGAGATTCCACCAGAATCCGATCCAAGCTATGAAGCGTGGCAACGGTGCAACGCACTCGTTCATTTGTGGATCATGAACTCCGTCACGCCCACGATTGCAAAAAGCATAGTGTTTCATGAGAACGCGATTGACGTGTGGAAGGATCTGCGGGAGCGTTTCTATCGAGGAGATTCGTTGAGTACATACGAATTAAACGAAGAGATTTACACTATGAAGCAAGGTGAACTTACTGTGACGGAGTTCTTCGGGGAATTGATGGTGCGTTGGGGGGAACTTGAAAGCTACAGGCCGATTCCGAGATATGAAGACTGTGTCGTGCGCTTNGTGACTGGTCTGAATGACGAGTTTTCTGTTGTGAAGTCGCACGTGTTGATGATGGATCCGTTACCAACGCTCAATAAGGTCTTCTCTATGGTTTTGCAGCAAGAGAGGCTAGGAAGGTTTTCAGGTGGTGGTGATAATGATTCGAAGATTCTGAGAAGTGGTGTAGATGCTCCTCCAAGTCCTCAAGGGAGAGAAAGATGCCAGAATGAGGAAAACGTGGAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCACAAAAAGAAAGAAAAGGCAGAGGCCCATCTTTATACAATTATAAAGGTGGCACGAGATGAAGACCTTACAGTGCAGATTGGAAAGGATATATACTTTGATCTTGTAGACCATGACAAAGTGTGGAGTTTCCGTGTCCAAAAGCAGATGCCTTTTAACGTTTTCAAGGAAGAGGTTGCAAAAGAGTTTGATATTCCAGTTCAGTTTCAGCGTTTTTGGCTATGGGCTAAGAGGAAAAACCACACTTATCGACCTTTTAGACCATTGACACACATTGAGGAAGCACAATCTGATTCACGTCCCATTGCTCCACCTGACAAGACAAAGGATGATATATTACTTTTCTTCAAGCTATATGATCCTGAAAAAGAGGAGCTGCGTTATGTTGGAAGGCTCTCTGTGAAGTGTACTGGCATGCCATCAGAAATCTTAACAAGGCTAAATGAAATGGCTGGGTACGATCCTGAGGAAGATATTGCACTTTATGAGGAAATTAAGTTTGAACCACATCTCATGTGTGAACCTATTGACAAGAAAGTAACATTTCTAGCAAGCCAGCTGGAGAATGGAGATATTGTATGCTTTCAGAAAGCTCCCTCTATGGATAGTGAGGAACATGTCCGCTATCCAGATGTGCCCTCATATTTAGAATATGTTTTGAAAGTGTGTAATTCAAACTAGTTGTAATCTGTTTTGTTTGTTAGAGTTTGTTAATAACTGATTGATTGTGATTGGTTATTAGAGGATCAAGTTAGTTTTAGTCTAAAAAGAGCAACCCGTGTGTAAGTGTGAGTATTGGGTGCAGATGCTTATGTCCGATGTGGGACTAGGCTTATGTGTATAAAAGCATGAATGAAAGTGAGCTTGATCCAATCTGTATTTGTGCAGTTCGAATTTTCTCCTTTTTTCTTACTTCTCTATTCTCCTTCAATCTGTGTGTAATCTAAGTGTGAGGAGTGAACTCACATCCTAACACGATCGAGCTGTGGGAGGACGGAGACTGAGGCGGGGAAGCAAACTGCACTGGCAAGGAGACGGTTCAGATCTGGTGCTCCCTTCTTTCGGATGGTTCGATAACCTTTCCATTTGCCACTTTGACAGAGAAAAGCTCCAACCTTGAGATAAAAGCTCCAACCTTGGAGGTCCATCAGACTCCATGCGAGAGGACGTTGAGAGGGAGAGGGCTGGCTGAGGGAGGGAGGGGGGTTGAGCTACAGAGTGAGAGGGAGGGGGCTCCATTGGACTCCATGGCAGAATGAAGAGGGCCTCGTGTGGACAAAAGACAATGGGGGNAAATGAAATCAGCAGTTCGGTGTGAAAGAAATGCTTTGATATTTTTGTAACCATACACACATTTTACTGGATCTAATGGATTGTTTGAGATCCACTTTTTTTTGTTAAACTATTTTGGAAAATGAAGGGTCTAGAAATCTACCCGTTTTGTACNTTTTTTTACCGTTTCAAACACAAAAATATCGTTTTGTGTTGGAGGTTATCGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00082	16967	23917	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11838	USP7, UBP15	EC:3.4.19.12	FoxO signaling pathway	map04068
			Viral carcinogenesis	map05203
			Herpes simplex infection	map05168
			Epstein-Barr virus infection	map05169

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000082s00007557.1	PF14244.1	UBN2_3	35	178	1.50E-40
Glyur000082s00007557.1	PF12436.3	USP7_ICP0_bdg	360	487	5.60E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.532
SRR1783600	control	6.580
SRR1783602	moderate drought stress	12.359
SRR1811619	moderate drought stress	12.037

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.240
DRR006520	Root Summer glycyrrhizin high producing strain	34.165
DRR006521	Root Winter glycyrrhizin high producing strain	33.543
DRR006522	Root Winter glycyrrhizin high producing strain	32.700
DRR006523	Root Summer glycyrrhizin low producing strain	49.074
DRR006524	Root Summer glycyrrhizin low producing strain	47.738
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.263
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.996

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.748
SRR2868004	Drought Stress (root)	4.677
SRR2967015	Control (root)	9.789

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.921
SRR9715740	Leaf	31.584
SRR9715741	Leaf	18.336
SRR9715739	Root	4.705
SRR9715742	Root	10.705
SRR9715743	Root	8.320

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.208
SRR8749029	MeJA induced 9h	0.025
SRR8749030	Uninduced	0.053
SRR8749031	Uninduced	0.048
SRR8749032	Uninduced	0.280

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.985
SRR8400027	Control - Root	20.470