Gene detail

Gene detail information of Glyur000081s00006802

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37210.1	5.00E-106	lysine decarboxylase family protein
NR	XP_003554380.1	8.97E-155	PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like [Glycine max]
COG	YP_686619.1	2.00E-63	hypothetical protein RCIX2172 [Methanocella arvoryzae MRE50]
Swissprot	tr\|Q8L8B8\|LOG3_ARATH	3.00E-134	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3
trEMBL	tr\|K7MZ16\|K7MZ16_SOYBN	3.00E-155	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G36590.2}

Sequence

Transcript Sequence

>Glyur000081s00006802.1
GGGGCAGTCACGTGCGAAGACCAACGGGGTTTATATAAAGGCATGGGCAAGAGACATAGAAATGGAAGAGTAGTAGCGAAGCAAAGCAAAGCATACACTATAGTCTCTCTATAGAGTGCATGCTGTTTTGTAATTGTAGTTGGTGCTTTGCTTTCGCCAAGTCACTAACACTTGTATGAGTTCGTAACCAACCAGTGGAGAGTGGAAACAGGGNAATATTAACATAGCCTTTGGAAGGAACAGGACTTGGAGGGAGATTCTTTTGCTTGAGAAAGGCGCTTGTGTGTGTTGTGTNTNTGTGTGTGTCACTGTTAAGTCACTAAATTAGATACAACTAACTAACTCTCTTATTACAACTAACAAATGGAGACAACATGCGGTGAGATAAGGCATTCAAAGTTCAAGAGGATTTGTGTGTTCTGTGGGAGTAGCCCCGGCAAGAAGAGTACCTATCAAGATGCTGCCATTCAGCTNGGCCAAGAATTGGTGTCAAGGAACATCGATCTGGTGTATGGAGGGGGAAGCATTGGTCTAATGGGATTAGTTTCACAAGCTGTTCATGATGGCGGTCGGCATGTCATTGGAGTTATTCCCAAGACGCTCATGCCTCGAGAGCTAACTGGTGAAACGGTGGGAGAAGTTAAGGCTGTTGCAGATATGCACCAAAGGAAGGCTGAGATGGCAAAGCATTCAGATGCCTTTATTGCCTTACCAGGAGGGTATGGGACTCTAGAGGAGCTTCTTGAAGTCATAACCTGGGCTCAACTTGGGATTCATGACAAGCCGGTGGGATTAGTAAATGTTGATGGATACTTTAATTCCTTGTTGTCATTCATTGACAAAGCTGTGGAAGAGGGATTTATTAGTCCAAATGCCCGCCACATAATTGTATCAGCACCAACTGCAAAAGAGTTAGTGAAGAAATTGGAGGAATATGTTCCCTGTCATGAGGGTGTTGCTTCAAAGTTGAGCTGGCAGATGGAGCAGCAGCTNGCTTACCCTCAAGATTATGACATGTCAAGGTAGCTGCTAGCAGTGTTTAACTTCACGTGCACGGAAGATGATACAAGACCATATAGAATTTTGGAAGTGGAAGAAGCTATTTTCGACTATCATCAGTATTCTGTTTTTTCTTTTTTATCCTTTAAATTTCTTGTGTAAATTACTTGGATTGACCTCAAATCTGTGAAAGTAAAAACTACTTTAATTACCTTGTGAAACTTTGATTTTCCTTAAAGTTGTAACTTGTAATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00081	352111	356662	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000081s00006802.1	PF03641.9	Lysine_decarbox	58	188	4.40E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.145
SRR1783600	control	0.146
SRR1783602	moderate drought stress	0.060
SRR1811619	moderate drought stress	0.030

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.960
DRR006520	Root Summer glycyrrhizin high producing strain	0.941
DRR006521	Root Winter glycyrrhizin high producing strain	0.177
DRR006522	Root Winter glycyrrhizin high producing strain	0.173
DRR006523	Root Summer glycyrrhizin low producing strain	0.954
DRR006524	Root Summer glycyrrhizin low producing strain	1.029
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.409
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.488

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.571
SRR2868004	Drought Stress (root)	14.212
SRR2967015	Control (root)	21.577

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.705
SRR9715740	Leaf	7.112
SRR9715741	Leaf	6.856
SRR9715739	Root	0.461
SRR9715742	Root	1.133
SRR9715743	Root	0.518

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.131
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.072
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.067

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.871
SRR8400027	Control - Root	6.168