Gene detail

Gene detail information of Glyur000081s00006796

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G30080.1	auxin response factor 16
NR	XP_007027336.1	Auxin response factor 19 [Theobroma cacao]
Swissprot	tr\|Q653H7\|ARFR_ORYSJ	Auxin response factor 18
trEMBL	tr\|A0A061ET58\|A0A061ET58_THECC	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur000081s00006796.1
AAAGCCCCTTTCTGTTATTTTTCTTGTGTGTGTGCCGTTTGGACTCTTGCACTGCATGAGCTAAAAAAATAGCTTTTAAAATAAAAGGGCTTCTCTGCTCTCTCTGCTTTGCTCTGTAATAGTGTGGGTCTCTGTCTCTGGCGTTTTATCTGCGCATCCGTGTCGGCCATACAATTCATCATCCCATGACTTTGAATCTATGAACGCCAAAGATTCACTATAGTTAACTCTGTTTTTCTTCATTTTTATTTTTTTGAGGAAAAAAAATGCTGTGAGGTGGATCGCTGGGTCTTCGGATTTTAGAATTTTGAACTATAATNATGGAGCTTTGAGGAGATATTGTTGCAGAGATTATCGTGTAGTCAGTTACGGATTTTTGTTTTTTCTTTTATTTTTTCTTTCTGGTTTTTTAATTATCATGTCTCTCCCCTCTTATCTTGTTCTGCCGCAGACAGGACAGTGACTGAGTCTGAAACTGTTGTTGTAGCCTCGATCTTGAACTGTGTTCATTTTTTAACAGGTTCTGTTTTTCTTTTTGTTGTAATGATTCAATTACAACCTTTTCACTGTCTCCCCGACTCTCCCTTTCACTTCCCTTCTCTGTTCTAAGGAGCTATGTTCTATTCCTCTTTTACAACATTGTTTGTTTCAACTTTGTGAAGTTTGAACACTCTCACACAGGGCAACTGTGAGATTATTATTATTTTTAGTTTTGGAAATAAAACCTTCCTGCTTCCACCAAAAGCTGAGAGACACAAGACTGGTGTGGTGATTGAACCTTTTAGAGTAATCAGAAATCAAAATTGGGAATAAAATTCAGAATTAAGAAGCTTCCGTCATCAAAATTGCTACCTGCAATTGTGGGCTTCGACTTAAGATTATGCTGCAATCACTTTTGTTGGGGATTTCCATGATTTCTTGTCGACAAGTGNCAATGATTCATGAGCTTTCAGCTTTTTTGTGATCATACATGCTTTTTGAGGAATTTGCAGTGAATAAAAGCTGCTATCTAGCTCCAACTAAGATGATGTCGTGTATGGAATCAAAGGAGAAACTGAAAGAGGTGGAAAAGTGTTTGGATCCTCAGCTATGGCATGCTTGTGCAGGAGGAATGGTGCAAATGCCACCGGTGAACACTAAGGTCTTGTACTTCCCGCAGGGCCACGCCGAGCATTCGTGTGAACCAGTGGACTTCAGGGCTTACCCCAAAATTCCACCTTTCATTCAATGCAGAGTTGCAGCTATCAAATACATGGCTGATCCCGAGACAGATGAGGTGTATGCCAAACTCAGGCTTGTTCCTCTGCACACTAACGAGGCTGATTTTGAGGATGATGGTGTTGGAGGCATCAACGTGTCTGAAACTAAGGAGAAACCCCCTTCCTTTGCAAAAACCTTGACTCAATCCGATGCAAACAATGGTGGTGGCTTTTCTGTTCCCAGGTATTGTGCAGAGACAATTTTCCCTCGTTTGGACTATTCAGCTGACCCTCCTGTTCAGAACATCCTTGCCAAGGACGTTCATGGGGAAACATGGAAATTCAGGCACATTTATAGGGGCACTCCAAGGAGGCATCTGTTGACAACCGGGTGGAGCACTTTTGTGAGTCACAAGAAGCTTGTTGCAGGGGATTCAATTGTGTTTCTGAGGGCTGAAAATGGGGATCTATGTGTCGGAATTCGGAGGGCTAAAAGAGGAATTGGCGGTGGACCGGAGCCTTCATCGGGTTGGAACCCGGGAGGCGCGATTTGTCCCGTGACTTATGGAGGATTTGCTGCCTTTTTGGGGGAGGATGATAACCAACTCTTGAGAAATGGTAATAGCAATGGATTGAGCCCAAGTGCTAGCTTGATGGGTAAAGGGAAGGTGAGAGCACAAGCTGTTATTGAAGCTGCAACACTTGCTGCCAATATGCAACCCTTTGAGGTGGTTTATTACCCTCGGGCAAGTACTCCAGAGTTTTGTGTGAGGACCTCTTTGGTTAGGGGAGCACTGCAGATTAGGTGGTGTCCCGGAATGAGGTTCAAGATGCCCTTTGAAACTGAGGACTCCTCAAGGATAAGTTGGTTTATGGGAACTGTGGCTTCTGTTCGGGTTGCCGATCCAAGATGGCCTGACTCTCCTTGGAGACTTCTCCAGGTTACATGGGATGAACCAGAGTTACTTCAAAATGTAAAAAGGGTGAGNCCGTGGCTAGTTGAGATTGTATCAAACATGCCTTCCATCCAATATTCCCCTTTCTCACCACCAAGGAAGAAATTGAGACTGCCTCAACACCCAGATTTCCCCCTTGATGGCCAGATTTCAGTTCCAACGTTTCCCAACAACCTTCTAAGTCCCAGCAGCAATCTCTTTGGTCGTTTACCTGAAAGTAGTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTACGGTCTATCCTTGTCAGATCTCCACCTCAATAAACTGCAATCAGGTCTCTTTCAGGTTGGTAATTTCCCACCATTTGATCGTGCTGCTACACCAATGAGGGTCCCCAATAGCCCAACATTGCAAAAGCCCAACACCAGTGACAATGTCTCTTGCTTGCTGTCAATAGCAAGTTCTACTCAGTCTAATTCAAAGAAACCGGATGATGTGAAGGCACCCCATTTGGTGCTTTTTGGCCAAACAATCCTCACCGAGCAGCAGATCTCTCTGAGTACCTCTGCTGACACAAATAGCTCACCTGATGGAAATGCTGAGAAAATGACCAATTTTTCTGATGGTTATGGATCTGCTCTTCATCAACAAGGCCTGCTAGAACGTTACTCTTGCGAGAGGTTCCAGCGGAACAAGAATCAATGCCAAGAAACTTTGGAGATAGGTCACTGTAAAGTCTTCATGGAATCAGAAGATGTAGGTCGGACTATGGACCTCTCGTTGCTTGGATCTTACGATGAACTATACAGAAAGCTAGCAGATATGTTTGGGATACAAAAATCTGAGGTTCTAAGTCATGTGCTTTACNGTGATATAACCGGGGCAGTCAAACACATTGGAGATGAAACATTCAGTGACTTCACCAAAACAGCCAGGAGGTTGACTATTTTAATGGATTCTAGCAGCGACAATGGAGGAGTGTAGATGAAGAAATAAAAGCATCACCTCAATTGTATAGCTGGTTGATCAATTCTTCTATTGCCATTCTGACCCTTTACCCTTCCNGAAGCAATGGGAGGAGACAACCTGATCTGATTTGTGGATATTAAAATCTCCCGATGATTAATGTTTCTCTTGGATCTCGAAGGGGATATATATGGATTTGAAATTTTCATCCATTCATGGCTCATGTTTTTCCTTCTCTTTATGGATTTTTATATAATATGGCTTACTTGAGAGTTGAGTTTTTTTAATANTTTTGTTGGGAAAAGAAGTGAGGGAGAGAAGGGGGTAGAGATCCTATATTCCTATAAGCATGATTAATTGGTTTATAGGAATGGCGTTTGTATTCAAACTCTTTGACAATGGTTTTGTAGTATGAAAAAAGTAGTTACCTAGGCTCTATACTTATTGATTAGGGGAAACGTTGTTTCCTTCTCTCTTCTGTAGTCAACTTTTTTATGCGATTGTACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00081	325267	329617	-

Gene family

Gene family	subfamily
Transcription Factors Family	ARF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000081s00006796.1	PF02362.16	B3	139	240	1.30E-20
Glyur000081s00006796.1	PF06507.8	Auxin_resp	308	390	1.50E-31
Glyur000081s00006796.1	PF02309.11	AUX_IAA	558	704	1.60E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.142
SRR1783600	control	7.231
SRR1783602	moderate drought stress	5.233
SRR1811619	moderate drought stress	5.194

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.561
DRR006520	Root Summer glycyrrhizin high producing strain	5.489
DRR006521	Root Winter glycyrrhizin high producing strain	2.234
DRR006522	Root Winter glycyrrhizin high producing strain	2.103
DRR006523	Root Summer glycyrrhizin low producing strain	17.618
DRR006524	Root Summer glycyrrhizin low producing strain	17.787
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.151
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.213

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.319
SRR2868004	Drought Stress (root)	7.840
SRR2967015	Control (root)	5.904

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.568
SRR9715740	Leaf	4.323
SRR9715741	Leaf	3.453
SRR9715739	Root	5.687
SRR9715742	Root	10.919
SRR9715743	Root	10.437

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.767
SRR8749028	MeJA induced 9h	0.307
SRR8749029	MeJA induced 9h	0.338
SRR8749030	Uninduced	0.336
SRR8749031	Uninduced	0.071
SRR8749032	Uninduced	0.031

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.954
SRR8400027	Control - Root	15.510