Gene detail information of Glyur000081s00006795 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03230.1 | 4.00E-27 | Protein of unknown function, DUF584 |
| NR | AFK35468.1 | 6.18E-65 | unknown [Lotus japonicus] |
| trEMBL | tr|I3S5C6|I3S5C6_LOTJA | 2.00E-65 | Uncharacterized protein {ECO:0000313|EMBL:AFK35468.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00081 | 310636 | 311139 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000081s00006795.1 | PF04520.8 | Senescence_reg | 33 | 167 | 3.30E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.643 |
| SRR1783600 | control | 0.839 |
| SRR1783602 | moderate drought stress | 1.749 |
| SRR1811619 | moderate drought stress | 1.555 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.183 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.078 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.657 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.659 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.033 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.094 |
| SRR2868004 | Drought Stress (root) | 20.018 |
| SRR2967015 | Control (root) | 40.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.526 |
| SRR9715740 | Leaf | 0.681 |
| SRR9715741 | Leaf | 0.518 |
| SRR9715739 | Root | 0.558 |
| SRR9715742 | Root | 3.303 |
| SRR9715743 | Root | 3.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 85.969 |
| SRR8749028 | MeJA induced 9h | 258.952 |
| SRR8749029 | MeJA induced 9h | 150.179 |
| SRR8749030 | Uninduced | 270.982 |
| SRR8749031 | Uninduced | 705.509 |
| SRR8749032 | Uninduced | 373.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.675 |
| SRR8400027 | Control - Root | 4.450 |