Gene detail

Gene detail information of Glyur000081s00006793

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53420.2	4.00E-117	plasma membrane intrinsic protein 2A
NR	XP_003625627.1	0	Aquaporin PIP2-1 [Medicago truncatula]
COG	YP_007100376.1	1.00E-20	MIP family channel protein [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|P43286\|PIP21_ARATH	2.00E-150	Aquaporin PIP2-1, N-terminally processed
trEMBL	tr\|Q2HV44\|Q2HV44_MEDTR	0	Major intrinsic protein (MIP) family transporter {ECO:0000313\|EMBL:AES81845.1}

Sequence

Transcript Sequence

>Glyur000081s00006793.1
ACAACACAACACATGCCCCCGCATATAAAACACTCTTACACCTGTTATTTCATTCCCGCAACGTTATCCTAGAAGAACTCAGAGACAGTACTCCCCCACTGTCCGTGTCTCTCTCTGTTTCTACCTCTGAACCCCCATGGCAAAAGACATCGAAACCGAAGCTCAAGGTGGTTTACCACACAAGGACTACCACGACCCACCACCAGCGCCGCTCTTCGACGGCGCCGAGCTCGGCAAGTGGTCCTTTTACAGGGCCATCATCGCCGAGTTCGTTGCCACCCTCCTCTTCCTCTACATCACCGTTTTAACCGTCATTGGCTACAACAGCCAAACCGACCCCGCTCACAACGGCACCGGTTGTGACGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTTGGCGGCATGATTTTCGTCCTCGTCTACTGCACCGCCGGCATATCTGGGGGTCACATAAACCCGGCGGTGACGTTTGGGTTGTTCCTGGCAAGGAAGGTGTCGCTGATAAGGGCGGTGTTGTACATGGTGGCACAGTGTTTGGGGGCGATATGTGGAGTTGGGTTGGTGAAGGCATTCCAGAAGGGGTATTACAACAGGTACAAAGGTGGTGCCAACATGTTGTCTGATGGGTACAGCAAAGGCACTGGCTTGGGTGCTGAGATTATTGGCACCTTTGTTCTTGTCTACACCGTCTTCTCTGCCACCGATCCCAAGAGAAATGCCAGAGATTCCCATGTCCCCGTTTTGGCACCACTTCCAATTGGGTTTGCAGTAAGCTTCGGTGCTGCTGTGATGTACAACAACGAGAAGGCATGGGACGACCAGTGGATCTTCTGGGTTGGACCCTTCATTGGTGCTGCAATTGCTGCAATATACCACCAGTACGTGTTGAGAGCACACGCGGCGAAGGCTCTGGGTTCTTTCAGGAGCTCTTCTTCACACCTCAGCCAAGTCACAGAGGCTCTTCACGCTTTATGCATGGTGGATTGGAATTTGTATATCCTCGTCACTATGTTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00081	288734	290544	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000081s00006793.1	PF00230.15	MIP	32	219	7.50E-62
Glyur000081s00006793.1	PF00230.15	MIP	211	247	3.50E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.808
SRR1783600	control	16.843
SRR1783602	moderate drought stress	26.270
SRR1811619	moderate drought stress	27.105

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.480
DRR006520	Root Summer glycyrrhizin high producing strain	0.330
DRR006521	Root Winter glycyrrhizin high producing strain	0.614
DRR006522	Root Winter glycyrrhizin high producing strain	0.555
DRR006523	Root Summer glycyrrhizin low producing strain	3.192
DRR006524	Root Summer glycyrrhizin low producing strain	3.336
DRR006525	Leaf Summer glycyrrhizin high producing strain	454.277
DRR006526	Leaf Summer glycyrrhizin high producing strain	452.486

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.046
SRR2868004	Drought Stress (root)	7.735
SRR2967015	Control (root)	10.933

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1386.788
SRR9715740	Leaf	970.997
SRR9715741	Leaf	1052.796
SRR9715739	Root	0.041
SRR9715742	Root	9.425
SRR9715743	Root	5.451

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.084
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.014
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.028

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.564
SRR8400027	Control - Root	4.396