Gene detail

Gene detail information of Glyur000081s00006788

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03190.1	1.00E-94	conserved peptide upstream open reading frame 47
NR	XP_004493965.1	0	PREDICTED: uncharacterized protein LOC101492513 [Cicer arietinum]
trEMBL	tr\|Q2HV37\|Q2HV37_MEDTR	0	Peptide upstream ORF protein, putative {ECO:0000313\|EMBL:AES81838.1}

Sequence

Transcript Sequence

>Glyur000081s00006788.1
ATGGTTGTTCTGCTACGCGCCCCATCGGTGTTCCATTTGGGANCCTTTGCTCACATGAACACCTATTTCGACTGTGTTGCCCATTTGGGTTCGCGTTCCGAAAACGCCACAANCTCGGGTCCCGGTTCATACTTGTTCCATTCCCACTTCTGGGTCTCCATGAATTGCGAGAAAGATGCTAACTTGACACTGAGCGTGGTCACTGAACTAATGGGCAAGCAGTTTTTGAACTTCGGAGCTAATAGCCTCTGCGTTGGAGAAGAAGGATCCTCAGTGGCCGTTGCGGCAATGAAACAGTTGGGATTCTCCAGCGTCATTGGTGTCTACACACACCGCTTTTTCTCCCTCAAGCACAAGAGGATCGTTTATGAGCTTGATTACCAGGACAATTCCTTCGATTTTGTGCTTTCTAGGGACATGGACAAGGTTTCTGTCCCTGCCTTGCTCGTGCTTGAGGTTGAGCGTGTCCTTAAGCCAGGTGGAATTGGTGCACTTCTTGTTAGTGCCAAAGGTAACCAGTACCACCCCAATGATTTGATAAGGTCAGCTACACCAGTGTCCTCATTATTGAGGTCTTCTAGTGTTGTGCATGTGGGTTCTATTGATGAATTCAACCTTGTGGTTTTCAAGAAAAGATCTGAAAATGCCAGTTCATTCTATCAGTATAGTTTACCAGCGGATTGTCCAAGTTTAACCTTCACCAAACCTCTCATAGAGCTGATGGAACCTCTTGTAAGTGAAAAACCCCTTCCCGGGTATGAGAAAGGGATCTCCTATTTGCCAAAATTTGTTGATGTTTCTGCTAGGAAGAGGATGGTGTATATTGATATTGGGGTAGGGGAGCTCATGAATGCCAATGTTAGTGGTTGGTTCCTGCCACCATCATATCCCATTGATCAGAAAGCTTTCAATGTGTATTTTGTTCACTACAACACTTCCATCCTTTTGTCCTATGTGAAGAGACCAGGTATCACCTTTGTTTATCACCCTGGATTGGCTGGTAATGGTAATGGTAATGGTAAGGTCACTGCCGAGATTGATGTTGATGGAGAAGACATGGATGTGGATCCTTATGTTGGGGAGGAAGAGTTTGATTTCGTTTCCTGGTTCAAAGAAACTGTGCGGTATGCGGATTTTGTTGTCCTGAAGATGAATGCTGGGAAAGTTGAACTCAAGTTCCTCTCGGATATATTTGACAGTGGAGCTGTATGCTTTGTGGATGAGTTGTTTCTCAAGTGTCCGGAGAGTGCAGATGAGGTTAAAACTACCAATACTGTGACCAGCAGGGAAAGCTGCATGGATATTTACAGGGGTCTCAGAAGCAATGGCGTCTATGCCCATCAGTGGTGGGGAGACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00081	261196	262554	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000081s00006788.1	PF08241.7	Methyltransf_11	122	162	7.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.276
SRR1783600	control	20.064
SRR1783602	moderate drought stress	48.461
SRR1811619	moderate drought stress	53.964

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.218
DRR006520	Root Summer glycyrrhizin high producing strain	30.451
DRR006521	Root Winter glycyrrhizin high producing strain	37.303
DRR006522	Root Winter glycyrrhizin high producing strain	36.842
DRR006523	Root Summer glycyrrhizin low producing strain	48.979
DRR006524	Root Summer glycyrrhizin low producing strain	52.177
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.477
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.687

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	108.061
SRR2868004	Drought Stress (root)	57.127
SRR2967015	Control (root)	98.370

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	162.468
SRR9715740	Leaf	39.371
SRR9715741	Leaf	108.286
SRR9715739	Root	89.927
SRR9715742	Root	91.214
SRR9715743	Root	92.206

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.317
SRR8749028	MeJA induced 9h	23.942
SRR8749029	MeJA induced 9h	13.539
SRR8749030	Uninduced	10.688
SRR8749031	Uninduced	2.583
SRR8749032	Uninduced	7.945

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	133.394
SRR8400027	Control - Root	126.057