Gene detail information of Glyur000081s00006779 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03160.1 | 5.00E-166 | homolog of mamallian P58IPK |
| NR | KHN02348.1 | 0 | DnaJ like subfamily C member 3 [Glycine soja] |
| COG | YP_001568837.1 | 3.00E-23 | chaperone protein DnaJ [Petrotoga mobilis SJ95] |
| Swissprot | tr|Q9LYW9|DNJ36_ARATH | 0 | DnaJ protein P58IPK homolog (Precursor) |
| trEMBL | tr|I1NA82|I1NA82_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G36460.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00081 | 229072 | 233332 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000081s00006779.1 | PF13414.1 | TPR_11 | 51 | 117 | 3.60E-08 |
| Glyur000081s00006779.1 | PF07719.12 | TPR_2 | 202 | 234 | 2.20E-05 |
| Glyur000081s00006779.1 | PF13371.1 | TPR_9 | 304 | 360 | 0.023 |
| Glyur000081s00006779.1 | PF00226.26 | DnaJ | 373 | 436 | 5.40E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.077 |
| SRR1783600 | control | 5.853 |
| SRR1783602 | moderate drought stress | 3.133 |
| SRR1811619 | moderate drought stress | 3.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.261 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.110 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.100 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.602 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.073 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.193 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.225 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 38.553 |
| SRR2868004 | Drought Stress (root) | 24.779 |
| SRR2967015 | Control (root) | 22.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.732 |
| SRR9715740 | Leaf | 8.718 |
| SRR9715741 | Leaf | 21.276 |
| SRR9715739 | Root | 6.128 |
| SRR9715742 | Root | 11.879 |
| SRR9715743 | Root | 10.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.425 |
| SRR8749028 | MeJA induced 9h | 20.249 |
| SRR8749029 | MeJA induced 9h | 17.150 |
| SRR8749030 | Uninduced | 22.984 |
| SRR8749031 | Uninduced | 22.772 |
| SRR8749032 | Uninduced | 19.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.366 |
| SRR8400027 | Control - Root | 23.931 |