Gene detail

Gene detail information of Glyur000081s00006774.1

Functional Annotation

Database	Orthologs	E value	Annotation
NR	XP_004143239.1	4.01E-28	PREDICTED: DNA-binding protein S1FA1-like [Cucumis sativus]
Swissprot	tr\|P42553\|S1FA1_ORYSJ	3.00E-14	DNA-binding protein S1FA1
trEMBL	tr\|A0A0A0KEM3\|A0A0A0KEM3_CUCSA	1.00E-28	DNA-binding protein S1FA {ECO:0000313\|EMBL:KGN48135.1}

Sequence

Transcript Sequence

>Glyur000081s00006774.1
CACACACGCACACACACACATATCTATATATATATATTGAACAGTGGCAATTTCGTTGGGGTTAAAGGTTAAAAGGTTAAAACTCCGTCTGGTTTCTAGAACCTTCTTCCCTTCAACGCGTGTTGCAAACTTTGTATTCAGAATCTGCATTTGTTTTTGTTTTTGACNCAATCACGAGCACGAGCACGGGTTCTCAGCGAAGCGTCAGCTATGGCCGATGACTTTGAATTCGCCGATAAAGTTCCTCCTTCCTTCGATCGCATGGGAAATGTTAAGGATGCTGGATCGCAAGGGTTCAACCCAGGCTTAATAGTTCTCCTGGTTGTTTTTGGGTTGCTATTGGCGTTCNTCATTGGAAACTATGTGCTCTACATGTATGCACAGAAGACCCTCCCTCCTAGAAAAAAGAAGCCAGTCTCAAAAAAGAAGATGAAAAAGGAGAGACTGAAGCAAGGCGTCTCTGCACCTGGAGAGTAGAGACTTTGTACTCACATGTTCTTCGGATTAAATTGTACTCTTCAGAAAAGTTTACTTGTTCTGTGGTGTCTCGAGTTACGTTAATTTTCATCTGTTTATGTCCTCTGTGTTACTGATAGAAAGCTTAGACACATTAATTTAGTGCTTAAGCAATGTATTTGAGACAAGGCTATTTCGTGTTTTAAATTATCACTTTGCTTCCTCACCGATTATTCTTACATTATGTTTGGATGACGAGGAAATAAGGAGAGAAAAATAGAGGAGGGGCACATATAAAGGAAATATTCCCCATTAAAACCACTCTCTCGAGTTTAGTGGGTACAAACTACCAAGTGTTTAAAAGCCTTTAAACAGTTTTACACTCATACAAAGGAATGTGTCTCTCTTCCTTTTGAAGAATACGCATTGGTACCTTGAACCGTCGGATTACGCTGTAACATCCTTTTAACATGTGTAATGATGCCAGAAAGGGCAAAGGAAGAGTGCGAAAAATTAAAAAAAAAACTGCAGCCAGTAGTCGGAGGAAACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00081	187380	189477	-

Gene family

Gene family	subfamily
Transcription Factors Family	S1Fa-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000081s00006774.1	PF04689.8	S1FA	22	88	2.80E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	208.071
SRR1783600	control	209.148
SRR1783602	moderate drought stress	98.817
SRR1811619	moderate drought stress	97.782

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	145.609
DRR006520	Root Summer glycyrrhizin high producing strain	144.198
DRR006521	Root Winter glycyrrhizin high producing strain	222.911
DRR006522	Root Winter glycyrrhizin high producing strain	216.981
DRR006523	Root Summer glycyrrhizin low producing strain	112.892
DRR006524	Root Summer glycyrrhizin low producing strain	113.598
DRR006525	Leaf Summer glycyrrhizin high producing strain	65.397
DRR006526	Leaf Summer glycyrrhizin high producing strain	64.769

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	123.263
SRR2868004	Drought Stress (root)	101.016
SRR2967015	Control (root)	87.459

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	89.437
SRR9715740	Leaf	107.937
SRR9715741	Leaf	95.946
SRR9715739	Root	57.292
SRR9715742	Root	57.331
SRR9715743	Root	54.773

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	125.894
SRR8749028	MeJA induced 9h	75.731
SRR8749029	MeJA induced 9h	118.745
SRR8749030	Uninduced	88.216
SRR8749031	Uninduced	59.044
SRR8749032	Uninduced	97.307

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	139.426
SRR8400027	Control - Root	145.464