Gene detail

Gene detail information of Glyur000081s00006768

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37090.1	2.00E-120	Nucleotide-diphospho-sugar transferases superfamily protein
NR	XP_003553541.1	0	PREDICTED: probable beta-1,4-xylosyltransferase IRX9-like [Glycine max]
Swissprot	tr\|Q9ZQC6\|IRX9_ARATH	3.00E-149	Probable beta-1,4-xylosyltransferase IRX9
trEMBL	tr\|I1NA65\|I1NA65_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G36280.1}

Sequence

Transcript Sequence

>Glyur000081s00006768.1
CAAAAACAATTGGTCATTCCATTATTATTCCTCCTCCCTCAGGGTTGTTTCTTCAGTCGGTCAATTTTAGAGGTTTTTTTTTTTTTGCAGAAGATGGGTTCAGTAGAAAGGTCAAAGAAGAAAACCCATTTATGGAAGAAAGCTATGCTCCATTTTTCTCTATGTTTTGTGATGGGGTTCTTTACAGGCTTAGCCCCAACAGGTAAATCTTCTCTCTTTTCTTCCAGTAAAGTANTTGCAGCCTCAAATGGAACAACAGAATTTGCACCTCAACCTGCTACAAGTGGCAGCAGAAATTGGATAGCTCCTGTTCCTGCAGTGACCATGCCCCATAAGAGGCATAGAGTTGTCCATGACCAAAAAACAACAACAACAAGAACAAAATTGCATGTAAAACCACTACCCCAGTTGAAGCCTAGGAGACTTGTAATTATAGTAACTCCAACAAGCACAAAACTCCCCTATCAAACAGTGTTTTTGAGGAGGTTGGCAAATACCATAAAGCTGGTTCCTCAACCTTTGTTGTGGATTGTTGTGGAAGCCAAAACGGATTCCACAGAAGTGTCTGATATACTGAGGAAGACTGGCATCATGTATAGGCATGTGGTTTTCAGTGAAAACTTCACTGACTTGGAAGCTGAACTGAATCACCAGAGGAATCTAGCACTTAAGCACATTGAGCATCACAGACTCAGTGGGATTGTACACTTTGCTGGCCTCTCCAATGTTTATGATCTCCAATTCTTCCAACATCTTAGACATATTGAGGTGTTTGGGACATGGCCAACGGCTTTATTAGTTGCAAACAGAAAGAAAGTGATAATTGAAGGACCTGTGTGCGACTCATCTCAAGTCATTGGTTGGCATTTGAGGAATATGAACAATGAAACAGACACAATTAGTCCTCCCATTCATATTTCAAGTTTTGCATTCAATAGCTCCATCCTTTGGGACCCTGAAAGATGGGGTCGCACTTCCTCTGTTCAAGACACCTCTCAGAATTCAATCAAGTTCGTGAAGCAAGTAGTTCTAGAAGATGAGGCTAAGTTGAAGGGGATTCCACCAGAAGACTGCTCCAAAATCATGCTCTGGCGTTTCAACTTCCATGTCCGTCGTACCNTTTCAAATCACTAATTTCTGACCACTACATCAGATGTTAGCTGAAGATAAAGGGGGGAATGACAGAAAATAATGAATGTTGAAGCAATACAAGAATTACTTTCCTACTTCTATATGAAAATTTATTCATTTTTTCTTACCTTTGCAAATGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00081	154549	156961	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000081s00006768.1	PF03360.11	Glyco_transf_43	132	336	2.90E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.074
SRR1783600	control	5.940
SRR1783602	moderate drought stress	3.052
SRR1811619	moderate drought stress	2.891

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.785
DRR006520	Root Summer glycyrrhizin high producing strain	12.910
DRR006521	Root Winter glycyrrhizin high producing strain	0.432
DRR006522	Root Winter glycyrrhizin high producing strain	0.427
DRR006523	Root Summer glycyrrhizin low producing strain	6.056
DRR006524	Root Summer glycyrrhizin low producing strain	5.813
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.022
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.840

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.638
SRR2868004	Drought Stress (root)	15.504
SRR2967015	Control (root)	15.010

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.804
SRR9715740	Leaf	2.913
SRR9715741	Leaf	1.570
SRR9715739	Root	2.568
SRR9715742	Root	9.326
SRR9715743	Root	7.061

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.030
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.616
SRR8400027	Control - Root	29.808