Gene detail information of Glyur000081s00006765 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03040.3 | 7.00E-94 | IQ-domain 2 |
| NR | XP_004493952.1 | 0 | PREDICTED: protein IQ-DOMAIN 1-like [Cicer arietinum] |
| Swissprot | tr|Q9SF32|IQD1_ARATH | 1.00E-105 | Protein IQ-DOMAIN 1 |
| trEMBL | tr|G7L1R6|G7L1R6_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK48636.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00081 | 146036 | 150736 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000081s00006765.1 | PF00612.22 | IQ | 111 | 129 | 3.00E-06 |
| Glyur000081s00006765.1 | PF13178.1 | DUF4005 | 365 | 445 | 1.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.028 |
| SRR1783600 | control | 13.016 |
| SRR1783602 | moderate drought stress | 9.307 |
| SRR1811619 | moderate drought stress | 9.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.088 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.941 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.824 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.813 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.742 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.878 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.344 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.434 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 44.077 |
| SRR2868004 | Drought Stress (root) | 37.880 |
| SRR2967015 | Control (root) | 33.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.355 |
| SRR9715740 | Leaf | 10.656 |
| SRR9715741 | Leaf | 13.845 |
| SRR9715739 | Root | 4.568 |
| SRR9715742 | Root | 9.998 |
| SRR9715743 | Root | 11.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.104 |
| SRR8749028 | MeJA induced 9h | 14.997 |
| SRR8749029 | MeJA induced 9h | 10.433 |
| SRR8749030 | Uninduced | 8.291 |
| SRR8749031 | Uninduced | 1.596 |
| SRR8749032 | Uninduced | 2.620 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.426 |
| SRR8400027 | Control - Root | 32.541 |