Gene detail

Gene detail information of Glyur000081s00006763

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G02960.1	6.00E-73	Ribosomal protein S12/S23 family protein
NR	CBI32689.3	1.21E-96	unnamed protein product [Vitis vinifera]
COG	YP_004004208.1	3.00E-50	30S ribosomal protein S12 [Methanothermus fervidus DSM 2088]
Swissprot	tr\|P46297\|RS23_FRAAN	8.00E-98	40S ribosomal protein S23
trEMBL	tr\|F6HQZ2\|F6HQZ2_VITVI	5.00E-97	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57041.1}

Sequence

Transcript Sequence

>Glyur000081s00006763.1
CTCTATATAAACACGACACTCCTTTTATTTTCAGGCTTTAGGGTTTTGCACTGCGGCTGCTGTTAACACTATCCATCTTCTCCGAGCTACAGCAACTCTCATCGCTGCAGAACTAAGCCTCAACCACCACCATGGGGAAGACACGTGGAATGGGAGCTGCCCGCAAGCTGAAGTCCCACCGTAGGAGGCAACGGTGGGCAGACAAGGCATACAAAAAATCTAACCTTGGCAACGAATGGAAGAAGCCTTTTGCTGGTTCATCCCATGCCAAGGGAATTGTTCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGAAAATGTGCCAGGGTTCAACTCATCAAAAATGGCAAGAAGATAGCTGCTTTTGTGCCAAATGATGGTTGCTTGAATTACATTGAAGAGAATGATGAAGTCTTGATAGCTGGATTTGGACGTAAAGGACATGCCGTGGGTGATATTCCTGGGGTCAGGTTCAAGGTTGTGAAGGTTTCTGGTGTCTCTCTCCTTGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAAAAGATGTGGGATGGCTTCTCTCTTTTTTTATAGTTTCTCCTCATATTTGTTATGAATTTTGGTTCATGAGACTAAGTGAGTTCTGTGGACATTTTTGTATCTTTAATNGTAATTTTTCCGAATTTCAACTGATTCACATTATCACATCTTTANATTTCCTCTCCCCTTTCTCTTTTTGTCGTGTTTTCTTCTCTGTTTTTTCAGACCTTGCCTGAAGGCTGAAGTAAACTTCACACCATATCACATTTGGTTTTGAGCAGTATTTGCAATTATCTCGGAAGAGCCTGATCTATTTTAACTAGACAAATGTAGATGCATTGTAAGGATTACAATGTAATGTGTGGGTATTGCTGTTGGTGTTAAAATCAACATAATATATTCTTTTTGTAGTCTTAATCTGGGATGGCAATAGACAATGTAGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00081	128979	130877	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

GO:0015935 small ribosomal subunit

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000081s00006763.1	PF00164.20	Ribosom_S12_S23	9	141	3.90E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	47.592
SRR1783600	control	47.490
SRR1783602	moderate drought stress	37.652
SRR1811619	moderate drought stress	37.882

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	90.899
DRR006520	Root Summer glycyrrhizin high producing strain	89.717
DRR006521	Root Winter glycyrrhizin high producing strain	31.194
DRR006522	Root Winter glycyrrhizin high producing strain	30.218
DRR006523	Root Summer glycyrrhizin low producing strain	73.972
DRR006524	Root Summer glycyrrhizin low producing strain	73.954
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.434
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.669

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	342.339
SRR2868004	Drought Stress (root)	189.003
SRR2967015	Control (root)	163.605

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	127.573
SRR9715740	Leaf	116.055
SRR9715741	Leaf	96.008
SRR9715739	Root	169.357
SRR9715742	Root	123.487
SRR9715743	Root	131.663

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	363.695
SRR8749028	MeJA induced 9h	127.314
SRR8749029	MeJA induced 9h	233.906
SRR8749030	Uninduced	25.755
SRR8749031	Uninduced	14.235
SRR8749032	Uninduced	34.055

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	214.386
SRR8400027	Control - Root	189.533