Gene detail

Gene detail information of Glyur000081s00006759

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G09660.1	0	minichromosome maintenance 8
NR	XP_004493943.1	0	PREDICTED: DNA helicase MCM8-like [Cicer arietinum]
COG	YP_001013097.1	2.00E-104	minichromosome maintenance complex [Hyperthermus butylicus DSM 5456]
Swissprot	tr\|Q9SF37\|MCM8_ARATH	0	Probable DNA helicase MCM8
trEMBL	tr\|G7L1Q5\|G7L1Q5_MEDTR	0	DNA replication licensing factor MCM8 {ECO:0000313\|EMBL:AES81796.2}

Sequence

Transcript Sequence

>Glyur000081s00006759.1
ATGCANAGAACTGCAGAAGAGACGGAGCTGCAGAGGGTCAGATATGGATGCGGATCCTTTTCCATGGATTCACTCGAGTTAATGGACATTTACTTTCCTCAGCAACTCTTCACCATCGAAGAAACCTGGCTCAATCTCACTGCTGCTCTTCTTTCCTTCTTCTCTTCTCCGCAGGGCCAAACCATCGCTTCTCAGGTGAAAAATGATTATGGAAACTATGTCTTGTCACTTGACTTTCAGCAGTTCAAAACAATGTGTCATATTGAAGAATTTTATGAAATGTTAATGGAGAAACCTAAAATTGCTCTCTTATGCATGAGTGCTGCCGTTCACAAGGTTTTGCTTTCCAAATGGGAGAATGACAAGCNGGAGCTTGGTGCAAAAGTAGACATCCGTCTTTATAACTCTCCTGAAACCATGATTGCGCTGAAGAACTTAAAAGCAGCGTACATTGACAAACTTGTCTCAGTACGTGGTACTGCTGTGAAAGTCAGCACAGTCAGGCCTCTTGTGGTAGAAATGAGTTTTGAATGCAGTAAGTGTAAACAAAGAATTACGCGCATATTTCCTGATGGAAAATTTTCACCGCCATCAACTTGCAATCTGAATGGCTGCAAGAGCAAAATCTTCAATCCATTGCGATCCACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAACCTGAAGATCACGAGGAAGGACGAGTGCCTCGAACAGTGGAATGTGAACTTACCCAAGATCTTGTTGATGCATGCATACCTGGAGATGTGGTGACTGTTACTGGAATTATAAGAGGAATTAACAATTACATGGATATTGGAGGAGGGAAGTCAAAGAACAAAAACCAAGGATTTTACTATTTGTATCTTGAAGCTGTATCCATAAAAAATTCGAAGTCACAGTCCATACCCGAGGATTCGCAAGACTCTAATGCCAAAGCTAGACCAACTGAGCTGTTTGATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTTGTGAAGTTTGCGGAGGAGCACGGTTCAGATTTATTTCGGCAAATCCTTCAATCTATATGCCCGTCCATCTATGGGCATGAGCTTGTTAAAGCTGGGATAACTCTGTCATTATTTGGTGGTGTACGAAAGCATTCTATGGATCAGAATAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATTGTAGGTGATCCTGGTCTAGGTAAGAGCCAGTTGTTACAAGCAGCAGCAGCTGTTTCTCCGCGTGGTATCTATGTCTGTGGTAATGCCACAACCAAAGCTGGCCTCACAGTAGCCGTAGTGAAGGATCCTATGACAAATGACTATGCTTTTGAGGCTGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCATCAGAGCATCAGGCTTTACTGGAGGCAATGGAGCAACAATGTGTCTCTATTGCAAAGGCAGGATTAGTAGCAAGTTTATCATCCCGGACTTCTGTCTTAGCAGCTGCAAACCCCGTTGGTGGTCATTATAACCGGGCAAAAACTGTAAATGAAAATTTGAAAATGAGTGCTGCTCTCTTGTCCCGTTTTGATTTAATTTTCATATTGCTGGACAAGCCTGATGAACTTCTGGACAAGCGAGTCTCGGAGCACATTATGTCACTTCATGCTGGATGTGGGCAACATTCACCGGCATTGAAAAAGCGACGTGGAGATCCACCTTCTGATTCAAGAGCTGCCGTATCACAGAATGCTGAAGGGTTAGATTTGGGTGTTAGATCTGGTTCTTTGATTTCAAGGTTGAGACTTGACCCACGAAGAGATGGTGATTTTGTTCCATTACCTAGTCAACTACTTCGCAAATACATTGCTTATGCAAGGAGTTTTGTCTTTCCTAGGATGTCCAAGCCAGCATCAGAAATCTTGCAAAAGTTTTACCTAAAACTGAGAGATCATAACACCTCGGCTGATGGCACTCCTATAACAGCAAGGCAGCTGGAAAGTNTAGTAAGGCTAGCTGAAGCTCGAGCTCGGTTGGACTTGAGAGTAGAAATAACGGCCCAGGATGCAATGGATGTTGTTGAAATCATGAAGGAATCCCTGTATGATAAATATGTTGATGAGCATGGTGTGGTGGATTTNGGTAGAAGTGGGGGGATGAGTCAACAGAAAGAGGCAAAACGCTTTCTGAATGCCCTCAATAAGCAATCGGAACTGGAACAGAAAGATTGCTTTTCAGTATCTGAAATATACAGTCTGGCAGATAGGATTTCCTTGAAAGTTCCTGATATTGATACTTTCATCGATAATTTAAACAGCGTTGGCTATCTACTCAAAAAAGGACCAAAGACATACCAGGTGTTATCCTCTTCGTACGCACGGACCCAATCATTTAGGACAAGGGGCTAAACTGAAGTTGAGCAATGCACAGTTTCACCTTATACAGAAGATCCCCTGCCCGAATGTGAGTAGATCCTNTTGCCGATATTTAACATACTTATAACGGCTTCATCCTATGATTGTCATAGAATTTGCAATGTCATGCACGGGGACGATGTAAATAATCTCCCGTGGTGTGAATATGTAATTGCAGGGCTGTTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00081	114323	121661	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006260 DNA replication

molecular_function

GO:0003677 DNA binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000081s00006759.1	PF14551.1	MCM_N	65	159	2.10E-08
Glyur000081s00006759.1	PF00493.18	MCM	344	705	1.70E-124

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.073
SRR1783600	control	1.099
SRR1783602	moderate drought stress	0.869
SRR1811619	moderate drought stress	0.882

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.188
DRR006520	Root Summer glycyrrhizin high producing strain	1.014
DRR006521	Root Winter glycyrrhizin high producing strain	0.515
DRR006522	Root Winter glycyrrhizin high producing strain	0.597
DRR006523	Root Summer glycyrrhizin low producing strain	0.586
DRR006524	Root Summer glycyrrhizin low producing strain	0.410
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.245
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.368

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.786
SRR2868004	Drought Stress (root)	3.961
SRR2967015	Control (root)	2.848

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.067
SRR9715740	Leaf	0.328
SRR9715741	Leaf	0.585
SRR9715739	Root	0.076
SRR9715742	Root	0.252
SRR9715743	Root	0.150

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.950
SRR8749028	MeJA induced 9h	4.749
SRR8749029	MeJA induced 9h	2.605
SRR8749030	Uninduced	1.237
SRR8749031	Uninduced	1.044
SRR8749032	Uninduced	0.538

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.490
SRR8400027	Control - Root	4.133