Gene detail

Gene detail information of Glyur000081s00006756.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53340.1	9.00E-52	nuclear factor Y, subunit B10
NR	XP_007162719.1	8.26E-108	hypothetical protein PHAVU_001G174600g [Phaseolus vulgaris]
Swissprot	tr\|Q8VYK4\|NFYB8_ARATH	4.00E-78	Nuclear transcription factor Y subunit B-8
trEMBL	tr\|V7CZA7\|V7CZA7_PHAVU	3.00E-108	Uncharacterized protein {ECO:0000313\|EMBL:ESW34713.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00081	95593	99001	+

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component

GO:0005622 intracellular

GO:0005634 nucleus

molecular_function

GO:0043565 sequence-specific DNA binding

GO:0046982 protein heterodimerization activity

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000081s00006756.1	PF00808.18	CBFD_NFYB_HMF	30	94	3.10E-28

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	13.873
SRR1783600	control	13.968
SRR1783602	moderate drought stress	17.287
SRR1811619	moderate drought stress	16.053

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.839
DRR006520	Root Summer glycyrrhizin high producing strain	41.929
DRR006521	Root Winter glycyrrhizin high producing strain	118.868
DRR006522	Root Winter glycyrrhizin high producing strain	113.891
DRR006523	Root Summer glycyrrhizin low producing strain	54.701
DRR006524	Root Summer glycyrrhizin low producing strain	54.749
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.685
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.099

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.639
SRR2868004	Drought Stress (root)	43.137
SRR2967015	Control (root)	47.209

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.209
SRR9715740	Leaf	12.799
SRR9715741	Leaf	11.850
SRR9715739	Root	37.452
SRR9715742	Root	13.672
SRR9715743	Root	19.014

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.207
SRR8749028	MeJA induced 9h	27.250
SRR8749029	MeJA induced 9h	25.107
SRR8749030	Uninduced	25.100
SRR8749031	Uninduced	23.607
SRR8749032	Uninduced	26.097

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.524
SRR8400027	Control - Root	40.611