Gene detail

Gene detail information of Glyur000081s00006750

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28550.3	2.00E-89	related to AP2.7
NR	XP_004493938.1	0	PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cicer arietinum]
Swissprot	tr\|P47927\|AP2_ARATH	8.00E-93	Floral homeotic protein APETALA 2
trEMBL	tr\|G7L1P7\|G7L1P7_MEDTR	0	AP2 domain transcription factor {ECO:0000313\|EMBL:AES81788.1}

Sequence

Transcript Sequence

>Glyur000081s00006750.1
GAAAAAAGAAAAGAAATAAATAGATGTGAATGGTAATAAGAGGGAAAAGAAAAGGAAGTCCCAGCAAGCATTCCTTTTGGTGATGTATCATGCTTGTTTCATATACCCCAACCAACTCTTTCTCAGTTTTCCTTCATTCTTCACCCTTTTCACTGCATGAAATCTCTCTCTCTCTTGCTCGCGCGCGCTCTTGTTAAACGGTTCACAGTCATGGCTCTTGGCATTCACTCAACACTAACAATAATAATGATGTGAAGCCGTTGGTGTTGCCGTTGCAGTAGATCCTTTCCCTCCCATTTCTAACTAACTCCCTTCACTTTTCCCTCCAAACTTTTTTTAACGGAATCGTAACAAACTCTCACACCGCTCTCTCTCTTTCTCTCGCAATGTTGGATCTCAACCTCAACGCCGATTCCCCCTCCGACAACAACACTCTTCCGCTCTCCGCCGCTCAAATGGAAAGCTCCGGCAGCTTCGATTCCTCCGTCGTCAACGCCGCCGACACCGAAGATTCATGCTCTTACGGTGATGCCTACGCTTACAGCTTCGCCATACTCAACAAAAACAACGGAAACGGTAACATCGCCGTCGACCACGCCGCTACAACCTCCGGAGCACTTCAACTCTCCGGTGCCGGAGACTTTAGGACCATTCAGCTTTTTCCTGCCGCCGACTCGAGAATCTCGCCGTCCGCGAGTAACGGATGGATGGATATGTCGTCGGAACATCACGGTGGCGTGCCGGAGCAGATTGTTGCTCCACGGCCACAGCCGGTGAAGAAGAGTCGTCGGGGACCGAGGTCGCGGAGCTCGCAGTATCGNGGCGTTACTTTCTACCGGAGAACCGGAAGATGGGAGTCGCATATTTGGGATTGTGGGAAACAAGTGTACTTGGGTGAGGAAGCGACCAACACTGATGATTGGAGAAGATTTCGTTTTATGCTAAGTGGATTTGATACTGCGCATGCTGCGGCAAGGGCATATGATCGAGCTGCAATTAAGTTCCGTGGCGTTGATGCGGATATCAATTTCGACGTCAGCGATTATGAAGAAGATATAAAGCAGATGAGTAACTTCACGAAGGAAGAGTTTGTGCATATTCTGCGTAGACAGAGCACTGGTTTCTCAAGGGGAAGCTCCAAATACAGGGGAGTTACCCTACATAAATGCGGGCGATGGGAAGCTCGTATGGGACAGTTTCTTGGGAAAAAGTATATATATCTTGGGCTATTCGATAGCGAGCTAGAGGCTGCAAGAGCGTATGATAAGGCTGCTATAAAATGTAATGGAAGAGAAGCGGTTACAAACTTTGAGCCCAGTTCTTATGAAGGGGAGTTAATTTCCCAGTCTGATCATGAAGATAGCAAGCAAAATCTTAATCTTAACTTGGGCATAGCTCCTCCTTCTAACTCTGAGGGTCAAATGGTGAACATACACCACAATGGAAGTGGTTTACAAGTTCAACATAGCTGGGATGGTATCCCCGTTGATAAGAGTGCCATGTTTGAGCACTCTGGATCAAGATCACTGAATGTTCAGCCATCTTATGGCTTCTCCATAGCATCTGAGCATCNGCCTTCAGTCTGGAGTGGTAACAATTTCTTTTCCACGAGTAAGGAAAGAGCAATGGAGAAGAGGATGGAAGCTGCTCCCATGCCAAGTTGGGCATGGCAAGTCCAAGCTCCTTACAGCGGGGCAACTCTGATTCCACCCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACAATAATACCGTCAGANGCCGATAGTCAAATTCATTTTCCAAACATGACATTCCTCCACCCTCAATTTCCCCCTCCAATCACCAACTCAAGCACCATATCCCCTTTCTACTGAAGGAGCTGAAAGCACAGCCAGGGAGAGCAAAGCAGACTTGTGTGGGGAGGTAGGGAATATAATTGACAAACTAGTAGGGGACTAAAAGTAGGAATTGAATTTTGCTTGGTTAAGGAGCTTTTGCCATTTGTACTTTAATATACCAATTTTCTTCAGTGTAAAGAAATGTCATGCCAAGAAGGCATGATGGTTTAACTCCTCTGCNTTTGCTGTAACGAGACGAATTACAATGAACTGACAAGCATTTACTTTGGGGTGGTGTCTACGGTGTGCAACTAGCGAAGGACGCGCACTGTGGGCAAGTAGAATTTGTAGAAGTGTACCGTAGACCTGCATGATACTAACCGTGGATATGTTTGTAATAAAAATGGACAGTTGAGATTCAAGAAGTGTCATCGAATGAGCAGCTGCGGATGAATTTAAGTGTTTCTCTAAATGAACAGTGCAAATGAGCAGTGCAAATGAACAGTACTCGTTCTCAGTCACCATCTTATTCTCCAACGATGACCCACCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00081	70788	74114	+

Gene family

Gene family	subfamily
Transcription Factors Family	AP2
EAR motif-containing Proteins	AP2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000081s00006750.1	PF00847.15	AP2	142	208	6.20E-08
Glyur000081s00006750.1	PF00847.15	AP2	251	301	8.00E-11
Glyur000081s00006750.2	PF00847.15	AP2	142	191	1.90E-14
Glyur000081s00006750.2	PF00847.15	AP2	234	284	7.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.056
SRR1783600	control	1.894
SRR1783602	moderate drought stress	2.407
SRR1811619	moderate drought stress	2.458

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.943
DRR006520	Root Summer glycyrrhizin high producing strain	0.989
DRR006521	Root Winter glycyrrhizin high producing strain	1.514
DRR006522	Root Winter glycyrrhizin high producing strain	1.358
DRR006523	Root Summer glycyrrhizin low producing strain	0.233
DRR006524	Root Summer glycyrrhizin low producing strain	0.233
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.588
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.175

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.136
SRR2868004	Drought Stress (root)	1.651
SRR2967015	Control (root)	2.156

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.048
SRR9715740	Leaf	2.020
SRR9715741	Leaf	3.618
SRR9715739	Root	0.355
SRR9715742	Root	2.279
SRR9715743	Root	2.207

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.019
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.379
SRR8400027	Control - Root	7.172