Gene detail

Gene detail information of Glyur000081s00006743

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G02830.1	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004493936.1	PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q8GYL7\|PP361_ARATH	Pentatricopeptide repeat-containing protein At5g02830, chloroplastic (Precursor)
trEMBL	tr\|I1NA46\|I1NA46_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G36140.1}

Sequence

Transcript Sequence

>Glyur000081s00006743.1
CATGGCTCAACGAAACAAACGGTTGGCCGAGAATGAGAGATTTCATGATCCTTGGTTCCTCCATTGTCACTCCTCCTCCTCCCAACCCACACCTACCATCTTCATCATCATCATCATCATCATCATCATCATCATCCACTCCACAACACCGCCACAGCATCAAACCCCACAAATCTCCTCGTCCAAAGTTCTCTCCTTTTCCCTCTTCCACATGGAACAACAACAACAACAATTCCTGCACCACCCTCCAAGCCCCTCTCACCCTCAACCACAGTGTTCAGGAATTCGAAACGGTTCTACAGGGTGCCCTTGATTCCGGGGTGAACGTTGAGCTTTTGGCCAAGGTGGTTCTGCTTGGTATCCGAGGCAGGAACGTTCAAACCGTGATTGACACTTTGAACAAAGTGCAGGCTCCTGGAATTTCCCTATCTACTCATCTTGATGACTCTGCTATGAATGTCATTGCAAANGAGTGTTGTCGAATGGTCACATGTGGCCACATTGAGGATGCTGTGGAATTGATGGAGGTTCTCGCACGTTTCCAGTTATCAATTGGAGAACTTGTTCAGCCATCCAACATAATAAAAACATGTGTTCTTAGTCGTAACCCAGAATTAGCTGTGAGGTATGCGTCTCTTCTTCCACAAGCACATGTTTTATTTTGCAAGATCATATCTGAATTTGGCAAGAGTAGGGATTTGATTTCTGCTCTGAAAGCGTATGATGCATTGAAGAAGAAATTGAATAGTCCCAATATGTACATATACCGGGCAATAATTGACGCTTGTGGACTCTGTGGCGATTTCATGAAATCTAGGTACATATATGAGGATTTGGTTAATCAGAAAATCACTCCAAATATATATGTTTTCAACAGTCTCATGAATGTGAATGCCCATGATCTCAGCTACACGTTAAATCTATACCAGAATATGCAGAATCTTGGTCTAAAAGCAGATATGACATCGTATAACGTCCTACTGAAAGCATGCTGCATTGCTGGAAGAGTTGACCTGGCCCAAGACATGTATAAGGAACTTAAGCATTTGGAATCAGTGGGACGACTGAAATTGGATGTTTTTACCTACAGCACAATTATAAAGGTCTTTGCAGATGCAAAATTGTGGCAAATGGCTCTGAAAATCAAACATGANATGCTGTCTGCTGGTGTTTCTCTTAATACTGTTGCATGGTCATCATTAATCAATGCCTGTGCACATGCAGGGCTTGTAGAGCAGGCAATTCAGTTATTTGAAGAAATGCTTTTGGCCGGCTGCGAACCTAATACGCAGTGTTTNAACATCATTTTACATGCATGTGTTGAAGCTTGCCAGTATGACAGGGCTTTTCGCTTTTTCCATTCTTGGAAGGGAAATAAGATGTTGGGGTCCTTTGGTGAAAGCTACAATAGCAATTTAGAGCAGGGAGGAATGCATAAAACTACTACTGTGCCAAATGGCATTTCTAATTCACATATCTTGAGTTTTACCAAGAGGTTCCCTTTCACGCCAACTACATCAACATACAATATTTTACTGAAGGCTTGTGGTACCGATTACTATCATGCAAAAGCATTAATCAATGAGATGAAAACNGTAGGTCTTTCCCCTAATCAAATAAGCTGGTCAATTTTGATAGATACATGTGGAGGATCAGAAAATGTGGAGGGTGCCATTGAGATTTTGAGAACCATGGTTGATGCTGGAATTAAACCTGATGTTGTTGCATATACAACAGCCATTAAGGTTTGTGTTGAAAGTAAGAATTTTAAGCAAGCATTAACATTATACGAAGAAATGAAAAGCTATGAGATACATCCAAATTGGGTGACATATAACACACTTNTAAAGGCACGCAGTAAATACGGATCCGTACACGAGGTACAACAGTGCCTGGCTATATATCAGGATATGCGAAAGGCAGGGTACAAGCCCAATGACTACTATCTGGAGGAACTGATTGAGGAGTGGTGTGAAGGAGTAATACAAGATAACAGAGAGTATGAAGGAGAATTTTCTTCCAGCAAGAAACCTGACATAGAGAGACCTCAGAGTTTACTGCTTGAAAAAATTGCGGCGCACCTGCTAAAGAGGGTAGCTGACATCCTAGCAATTGATGTNCAAGGGCTCACAAAGGTTGAAGCCCGCCTGGTCATTCTTGCAGTTCTTCGAATGATCAAAGAGAATTATGCTTTTGGACATTCAGTGAATGATGACCTCTTGATCATCATAGGAGCTACCAAAGCAGATGAAAATCCATCCAAAGACATATTAGAAGTGCAAGAGGCTATGATAAAAATTCTTAAGAATGAACTGGGGCTTGAAGTTTTCCCAGCCAGAACCAGATTTGCACCAAGGGACACAGCAAAGTTAGAGAACCCCAACCTTTCAAATCTCAACATAGAAGCACTACCAAGAGAGAATGCATTATCCACAACAATGGAGTTTCAGACTAGGAGACCTGCAGTTCTACAAAGATTGAAGGTCACCAAAAAATCATTATACCGTTGGTTGCAGAGGAAAGTAAGCATAAAATAGTATTTGATGACCTCTTCATTGTTTATATTAGAACTCATAGGAATTATGTACAAATGTCAGATATGCCAATGGCATTTTTTTTCTACCAGCGGCTTCTTCGACCTGTATATAATCAGGATATAGCTGCATATGTATCTGTACCAAAAGTATAAGCTGTAACTCGATGACTGATACCCAGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00081	47559	53390	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000081s00006743.1	PF13812.1	PPR_3	243	275	0.8
Glyur000081s00006743.1	PF01535.15	PPR	312	337	0.00022
Glyur000081s00006743.1	PF01535.15	PPR	350	380	0.014
Glyur000081s00006743.1	PF13041.1	PPR_2	383	430	9.70E-11
Glyur000081s00006743.1	PF01535.15	PPR	529	559	0.022
Glyur000081s00006743.1	PF13041.1	PPR_2	561	607	8.30E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.572
SRR1783600	control	1.557
SRR1783602	moderate drought stress	1.401
SRR1811619	moderate drought stress	1.337

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.639
DRR006520	Root Summer glycyrrhizin high producing strain	1.698
DRR006521	Root Winter glycyrrhizin high producing strain	0.758
DRR006522	Root Winter glycyrrhizin high producing strain	0.709
DRR006523	Root Summer glycyrrhizin low producing strain	2.200
DRR006524	Root Summer glycyrrhizin low producing strain	2.183
DRR006525	Leaf Summer glycyrrhizin high producing strain	79.847
DRR006526	Leaf Summer glycyrrhizin high producing strain	79.650

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.847
SRR2868004	Drought Stress (root)	1.351
SRR2967015	Control (root)	1.157

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.200
SRR9715740	Leaf	40.647
SRR9715741	Leaf	13.516
SRR9715739	Root	0.037
SRR9715742	Root	0.389
SRR9715743	Root	0.551

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.277
SRR8749028	MeJA induced 9h	1.605
SRR8749029	MeJA induced 9h	1.232
SRR8749030	Uninduced	1.330
SRR8749031	Uninduced	1.292
SRR8749032	Uninduced	1.018

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.738
SRR8400027	Control - Root	1.333