Gene detail

Gene detail information of Glyur000081s00006742

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37240.1	5.00E-91	Thioredoxin superfamily protein
NR	XP_004493935.1	7.56E-162	PREDICTED: thioredoxin-like protein AAED1, chloroplastic-like [Cicer arietinum]
COG	YP_002606071.1	5.00E-11	hypothetical protein HRM2_48590 [Desulfobacterium autotrophicum HRM2]
Swissprot	tr\|Q9ZUU2\|AAED1_ARATH	4.00E-114	Thioredoxin-like protein AAED1, chloroplastic (Precursor)
trEMBL	tr\|C6TDY7\|C6TDY7_SOYBN	1.00E-152	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G36130.1}

Sequence

Transcript Sequence

>Glyur000081s00006742.1
TGTCGTTTTCTCAACTTGCTAAAACGAGGGACAAACAGAAAGATGAAAAACGAACCTTCACCATTTATTTGTTTTGCTTCCTGAGACCGTGTTCCATGGCGTGCTCTCCTTCTACAACGCTTTTGTCCAATTCTCTTCACCNTAACAATAATACAAACCAGTGCCGGCTGCATCATCATGTGTATCCCACCACCCTTTCACTGAACCAAAAAAACCTTCGACTATATTCTAAGAATCTACTCAAACTTTCAACCACCTGGCACCGTGTATCGACCATAACCTCTGCTTCTGGTTCTGCAGGAGTTGAGTCTCCCGCGCAGAGTGAGGATNCCTCGAGCTCATTGGATTTGGTGAAAGTGTTTGATTTGAAAGGAAATGGGATTCCAATTTCTGACTTGTGGAAAGATAGGAAAGCCGTCGTGGCATTTGCTCGCCACTTTGGGTGTGTGCTTTGCCGTAAAAGGGCTGATTATCTTGCATCCAAGAAGGATATAATGGATGCATCTGGTGTGGCACTTGTATTAATTGGACCTGGGAGCATTGATCAGGCCAAAACCTTTGCTGAGCAAACAAAATTTAAAGGAGAAATCTATGCAGACCCCACTCAATCGTCATATGAGGCCTTAAGATTTGTTTCTGGAGTTTTAACCACATTTACCCCCAAAGCAGGTCTTAAGATAATAGAATTATATATGGAAGGCTATCGACAAGATTGGAAGCTTTCATTTGAAAAGGAAACAGTTAGCAGAGGAGGCTGGCAACAAGGAGGAATCATAGTTGCAGGTCCTGGTAAAAATAACATCTCATATATTCACAAGGACAAAGAAGCAGGGGATGACCCAGAAATTGAAGAGATCTTAAAAGCATGTTGCTCATGAAGAAAGAAGAGAGGGAGCCCCTCTTTCATAAAGCATTGTATATCATATTTAGCTGCTTCTTACGCTGAACAGCAACTTTGCCTTGGAACCTATTACAATCAGGCTCTTAATTTAAGATTCTATTGTTTGTTTTCAAAATCTTGTATATAATAATATTTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00081	44253	47291	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000081s00006742.1	PF13911.1	AhpC-TSA_2	127	243	1.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.463
SRR1783600	control	22.502
SRR1783602	moderate drought stress	23.810
SRR1811619	moderate drought stress	23.784

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.787
DRR006520	Root Summer glycyrrhizin high producing strain	21.927
DRR006521	Root Winter glycyrrhizin high producing strain	25.457
DRR006522	Root Winter glycyrrhizin high producing strain	24.597
DRR006523	Root Summer glycyrrhizin low producing strain	38.497
DRR006524	Root Summer glycyrrhizin low producing strain	38.368
DRR006525	Leaf Summer glycyrrhizin high producing strain	77.895
DRR006526	Leaf Summer glycyrrhizin high producing strain	77.173

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.931
SRR2868004	Drought Stress (root)	15.064
SRR2967015	Control (root)	10.615

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	65.428
SRR9715740	Leaf	78.473
SRR9715741	Leaf	72.264
SRR9715739	Root	5.824
SRR9715742	Root	12.668
SRR9715743	Root	9.775

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.263
SRR8749028	MeJA induced 9h	11.868
SRR8749029	MeJA induced 9h	17.117
SRR8749030	Uninduced	7.906
SRR8749031	Uninduced	6.249
SRR8749032	Uninduced	4.230

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.907
SRR8400027	Control - Root	26.921