Gene detail

Gene detail information of Glyur000080s00008704.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26100.1	0	casein kinase 1
NR	XP_003542336.1	0	PREDICTED: casein kinase I isoform delta-like isoform 1 [Glycine max]
COG	YP_632759.1	1.00E-17	serine/threonine-protein kinase PKN1 [Myxococcus xanthus DK 1622]
Swissprot	tr\|P42158\|KC1D_ARATH	0	Casein kinase I isoform delta-like
trEMBL	tr\|I1MSF4\|I1MSF4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G06140.1}

Sequence

Transcript Sequence

>Glyur000080s00008704.1
CGACCAGATCAAAGGCATAATCATCATCATCATCATCATCATCATAATGCAAGAGAGAGAGAATGAAATTGAATACACCAATTCCACAACAAACAACACCATATCCAAATCCAAATGCATTCATTCCTTCACTCCTCCTTTCGCTTTCTTTTTCCTTCCAATTTCTCTCCACTTTAACCTAACCCTGCAATTATCACACCCAATTACCTAAAAAACACAATCACAATCACACCTAATTTCCTCATCCTAGATCTCCCACAAAATTCTTCTCTCATTTTTCCTTCATATTCTGCCGTTATGTTTTTTTGTTCTATTCATGAATTCCAGTTGTGGGTGCTGCCGACAATATATGGCATNTAATATTTTCCTTTTTTAGAATAATAATAAGGGGGTTGTGGTTATTAGCTTAGGGTTCCATAGTTTAATCGCTTTTCCCCAACCACCCCTCTTTGAATGGAACCTCGTGTTGGGAATAAGTTTCGCCTGGGTCGGAAGATCGGTAGTGGCTCCTTTGGGGAGATCTACTTAGGTACTAATATTCAAACCAACGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAATTGCTGTATGAGTCCAAGTTGTACAGAATTCTGCAGGGAGGAACTGGAATTCCAAATGTTAGATGGTTTGGAGTGGAGGGAGACTACAATGTTTTAGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTTAACTTTTGTAGTAGAAAGTTATCACTAAAGACTGTTCTCATGCTTGCTGATCAAATGATCAACCGCGTTGAGTTTATTCATTCTAAATCATTTCTACATCGGGACATCAAACCAGATAATTTCCTAATGGGATTAGGAAGGCGTGCAAACCAGGTTTATGCTATTGATTTTGGTTTGGCTAAGAAATACAGGGATAGTTCAACCCATCAACACATTCCTTACAGGGAAAATAAAAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATTTGGAGTCTCTTGGTTATGTTTTGATGTACTTCTTGAGAGGAAGTCTACCTTGGCAGGGACTTAAAGCAGGAACCAAGAAACAGAAGTATGAGAGAATCAGTGAAAAAAAGGTTTCTACCTCGATTGAAGCCTTATGTCGGGGTTATCCAACAGAATTTGCATCATACTTTCATTACTGCCGCTCATTAAGGTTTGATGATAAGCCAGATTATGCTTACCTCAAAAGGATATTCCGCGACCTGTTTATTCGTGAAGGATTCCAGTTTGATTATGTGTTTGACTGGACCATCTTGAAGTATCAGCAATCACAACTTGCCACACCTCCAACACGGGCCATTGGTCATAGTGCTGGAACCAGTTCTGCATTTCCGCCGGCTGTTACTAATGCTGATAGACATACAGGAGCGGAAGAAGGGCAACCTCCTGGTTTGGTTTCAGTGGATTCCTCGAGGCGCAGAATGTCAGGGCCCATTCTAAATAATTTATCAAGTGCCAATGTCTTGGGTCAGTCAAGTGGATCATCGAGACGAGTTGCTGTTTCTGGTAGTCGTGATGCATTTGTTGGTGCTGAGTCAGATGTTCGTANTCGTACTGCTGAGGCTAGCATTGGAGCAGCACACAGAATTTTGGGTGGGCAAAGAAGTTCACCAATTGGATCTTCTGATCCCAAGAGAGTAGCATCATCTGGGAGAAATGCTTCTCATGTAAAAAATTATGACACTGCCCTTAGGGGAATGGAGGGTTTGCAGTTGGAGAATGACGAGAGGACTCATTATTAATATCTCACCTCAGCTAATGAATCTTAGTTGATAGGCACTTCAAAAGCTGCTTATGTTGCTAAGTTGAGCTGTGAGAAATTTGGAACTGAACTTGAAATTCTGGGTTTGTATTGTTAACTCATCTGCTCAAACCAGGGATTGTGCTTGCTGTAAAGTTCAGGTTTAATTGGCACTTCGCTTCTGGTCGGAACTCCAAAGTTTTTAACATCTTTTCCTGCTGAGTTATTGTATTGGTTTACCAGAATTTACAGTGTCACGTGGATCACAAAGGTCAAAATTATCAAATACAGGCCAAAATGTAATTAGCCATTGTACTCTTGTTGCTGTTGGACAAGAATTTCTATAGTTTCCGCGATGTAAGTGTCTGGAAATTATTCTGGTATGAGGAACTTGGGAATGTTTTGACAAGCTGAAATCATAGTATCTTCCTAGTTTTTTCTAGTTGATATCTGTCATAATAACCTTGTATNACATTTTATTTCGATCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00080	289626	295103	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:3.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02218	CSNK1, CKI	EC:2.7.11.1	MAPK signaling pathway - yeast	map04011
			Hippo signaling pathway - multiple species	map04392

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000080s00008704.1	PF00069.20	Pkinase	9	243	5.80E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	62.954
SRR1783600	control	63.260
SRR1783602	moderate drought stress	51.536
SRR1811619	moderate drought stress	50.878

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	56.664
DRR006520	Root Summer glycyrrhizin high producing strain	56.143
DRR006521	Root Winter glycyrrhizin high producing strain	34.805
DRR006522	Root Winter glycyrrhizin high producing strain	34.487
DRR006523	Root Summer glycyrrhizin low producing strain	64.020
DRR006524	Root Summer glycyrrhizin low producing strain	64.331
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.540
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.232

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	75.178
SRR2868004	Drought Stress (root)	93.964
SRR2967015	Control (root)	78.705

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.673
SRR9715740	Leaf	42.946
SRR9715741	Leaf	59.025
SRR9715739	Root	17.153
SRR9715742	Root	43.386
SRR9715743	Root	43.026

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.288
SRR8749028	MeJA induced 9h	33.993
SRR8749029	MeJA induced 9h	19.160
SRR8749030	Uninduced	59.428
SRR8749031	Uninduced	66.879
SRR8749032	Uninduced	36.881

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	101.678
SRR8400027	Control - Root	102.651