Gene detail

Gene detail information of Glyur000080s00008698.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19430.1	3.00E-126	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1
NR	AFK40275.1	0	unknown [Medicago truncatula]
COG	YP_007146025.1	1.00E-13	WD40 repeat-containing protein [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|Q8L4M1\|THOC6_ARATH	3.00E-163	THO complex subunit 6
trEMBL	tr\|I3SJ33\|I3SJ33_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK40275.1}

Sequence

Transcript Sequence

>Glyur000080s00008698.1
GTTATCACTTATCACGATCTTTCAAACGTCGTCGTTGAGTGCATACATACATAGCCTGTGTAACAAAGGCGCGGCGGCGGAGGGAGGCGGTTGAAGGTAACCAACGAAGGGGAGTGGTGGGAGCGAGGTTGCAATGTGCGGTGACGCTACCAACTGGGACGAAGAAGCGTACAGGGAAAGTGTACTGAAGGAGAGGGAGATTCAAACGCAAACCGTTTTCAGAACCGCCTGGGCTCCCTCCCAAACCTCCAACACTAACCCTGACTCTCTCATCGTTGCCTCCAGCGACGGTTCCATCGCCTCCTACTCCATCTCTCCCTCTAAGCTAAAAAATTCCTTTGGTTTTATCAATACCAATACAGATAAGTTATTGGCTGAGCCGGATTGCTNCTTTCAAGCGCATGATGGCCCTGCATATGATGTTAAATTCTATGGTGATGGTGAAGATGCTCTGTTGCTGAGTTGTGGTGATGATGGTCNGATTCGAGGATGGAGATGGAAGGAACTCACAAGCTCAAAGTATTGTGTTTCTTCACAAGGAAATGATATCAAGCCTATACTTGATGTGGTAAATCCTCAACACAAAGGTCCCTGGGGTGCACTTTCACCTATCCCTGAGAATAATGCTATTGCTGTTAATACCCAGGGGGGATCTGTTTTTGCAGCTTCTGGTGACTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTAAAAATGGTATTCAAGGGTCACTCGGATTACTTGCATTGTATTGTTGCTCGAAACTCATCCAATCAGATCATAACAGGTTCAGAGGATGGGACCACACGAATTTGGGATTGCAAAAGTGGAAAGTGTATCCAAGTGATTGATCCTGCAAAACATTTGAAGTTAAAAGGACCTGTTTCATGGGTTGGCTGTGTTGCTTTAGATGCAAGTGANAGCTGGCTGGCTTGCAGTAGTGGACGGAATATATCACTTTGGAACCTTGCTGCTTCAGAGTGCACATTAAGGATTTCAACTCAAGNTTCTGTACAGGACATGTTATTTGACAACAATCAACTTTTGACAGTTGGTGCAGATCCTCTACTGAAACGCTTTGACATGAACGGTGTGATCCTTTCACAAATACAGTGTGCTCCTCAATCAGCCTTTTCTATCTCCTTACATCCCGCAGGGGTTATGGCCGTTGGAGGTTACGGATGTCTTGTGGATGTTATCTCGCAATTTGGCAGCCACATGTGCACATTTCGTTGCCGATGTGTTTAGCGAATGACAAGGTTACATGGATTTGTAATTGTTGTTGTTGTTATTATTATTATTGGCTGTATGTGTAGATTTAGTTACTATCTGATTTCCCTAGCCCAAAAACTCTCTGTTCTCGTGTAATTTATGAGTTAATCGCTTCACAGCATATTATTGATACGCCCTAAGCAGGAAGGTTTAAAGCATTTACTCGTCCAACTGCCTCAACTAAAGCGGCACTANGATATTTTAAGGACTGCTTGATCGGCATTCATTTGTTTCTAAATGATTCTGTTTATGCTGCTAGGTTCATCATTATAGATTGAGTTTTACGAGGTTGAACATAATTTTAAATGTGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00080	258597	263761	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000080s00008698.1	PF00400.27	WD40	83	120	0.0036
Glyur000080s00008698.1	PF00400.27	WD40	192	230	3.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.472
SRR1783600	control	17.117
SRR1783602	moderate drought stress	30.671
SRR1811619	moderate drought stress	30.702

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.184
DRR006520	Root Summer glycyrrhizin high producing strain	16.877
DRR006521	Root Winter glycyrrhizin high producing strain	34.335
DRR006522	Root Winter glycyrrhizin high producing strain	33.397
DRR006523	Root Summer glycyrrhizin low producing strain	20.683
DRR006524	Root Summer glycyrrhizin low producing strain	20.776
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.386
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.148

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.498
SRR2868004	Drought Stress (root)	30.257
SRR2967015	Control (root)	32.808

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.340
SRR9715740	Leaf	9.256
SRR9715741	Leaf	10.615
SRR9715739	Root	9.941
SRR9715742	Root	10.492
SRR9715743	Root	11.149

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.507
SRR8749028	MeJA induced 9h	26.410
SRR8749029	MeJA induced 9h	27.892
SRR8749030	Uninduced	28.949
SRR8749031	Uninduced	18.386
SRR8749032	Uninduced	25.816

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.520
SRR8400027	Control - Root	21.299