Gene detail

Gene detail information of Glyur000080s00008691

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12010.1	8.00E-158
NR	XP_004507965.1	0	PREDICTED: putative nuclease HARBI1-like [Cicer arietinum]
trEMBL	tr\|A0A061GLF2\|A0A061GLF2_THECC	0	Uncharacterized protein {ECO:0000313\|EMBL:EOY30376.1}

Sequence

Transcript Sequence

>Glyur000080s00008691.1
ATGGATCCCAACAACAACTCCAGTAGTGTAAACACAACAAAAAAGAGACAAAGAAATGACCCCGAAGAAACACAATGCAACTTCAATTTCAACCTCAACGACACCGCATTGAACGACATCCTCAATTCCCTCATTCAACTCGACAAGCAACAACAACAGCCACCTCCNACGGTGATGGATCCCAACCCCAACCAATTCCAATTCCAAGGCCAACTGAGCGAGTTCAAGTTCGAGGCCGAGTTGGACGAGTCAACATCGCCAACCAAGAAGTCGCGTCGCTCCGACGGACAGGCCCAGGCCCAGGCAGCGGCGAGTTCCTCAATGGGCCCAGGCCCACAGAGGCGGTTATGGGTGAAGGACCGTTCGAAGGACTGGTGGGAATGGTGCTGCCACCCTGATTTTCCGGAAGAAGAGTTCCGGCGGTGTTTCCGGATGAGCAAGGCGACGTTCGAGATGATATGCGGCGAACTCGACGCGGCGGTTACGAAGAAGAACACGATGCTACGCGACGCCATACCCGTACGGCAGCGCGTCGCCGTCTGCATATGGAGGCTCGCCACGGGGGACCCACTCCGAGAGGTTTCAAAGCGCTTCGGTTTGGGAATCTCCACGTGTCACAAGCTCGTCCTCGAGGTCTGCGCCGCCATCAAAACCGTTCTGTTACCCAAGTTCATTCGCTGGCCCGATGAACCCAACATGAACCTCATCAAACAAGAGTTCGAATCCCTCTCTGGGATTCCCAATGTCGGTGGCTCAATGTACACTACACACATCCCCATCATTGCACCAAAATCCAAAGTCAATTCCTATTTCAACAAGCGCCATACTCAGAGAAACCAGAAAACCTCTTACTCTATTACCGTTCAGGGCGTGGTTGATCCAAGAGGGGTTTTCACTGATGTGTCTATTGGTTGGCCTGGTTCTTACCCAGATGATCAAGTTTTGGAAAACTCTGCTCTGTATCAGAGAGCCGTGAGGGGGAATTTGAAGGATGTTTGGGTTGTTGGGAATTCAGGGCACCCTTTGATGGATGGGGTTTTGGTGCCTTACACGCATCAGAACCTTACTTGGACGCAGCACGCGTTTAATGAAAAAGTTGGGGAAATTCAGAGGCTTGCAAAGGATGCGTTTGCGAGGTTGAAAGGGAGGTGGTCTTGTTTGCAGAAGAGGACGGAGGTGAAGATTGAGGATTTGCCTGGGGTTCTTGGGGCTTGTTGTGTCTTGCACAATATCTGTGAGATGAGGAACGAGAGCATGGACCACCCTGAGTGGAGTTTTGAACTCTTTGATGATGAGATGGTGGCTGAGAATGCTATTCGCTCTGCCAATGCGGCGCAGGCTAGGGACCACATCGCTCACGATTTGTTACACCGTGGCCGTGCTGGCACTACTTTCTTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00080	224929	226329	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000080s00008691.1	PF13359.1	DDE_Tnp_4	254	410	7.10E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.617
SRR1783600	control	1.574
SRR1783602	moderate drought stress	1.254
SRR1811619	moderate drought stress	1.119

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	689.331
DRR006520	Root Summer glycyrrhizin high producing strain	679.569
DRR006521	Root Winter glycyrrhizin high producing strain	0.789
DRR006522	Root Winter glycyrrhizin high producing strain	0.562
DRR006523	Root Summer glycyrrhizin low producing strain	815.256
DRR006524	Root Summer glycyrrhizin low producing strain	826.841
DRR006525	Leaf Summer glycyrrhizin high producing strain	347.875
DRR006526	Leaf Summer glycyrrhizin high producing strain	341.723

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.549
SRR2868004	Drought Stress (root)	138.259
SRR2967015	Control (root)	618.657

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2076.502
SRR9715740	Leaf	1974.142
SRR9715741	Leaf	2613.149
SRR9715739	Root	2758.805
SRR9715742	Root	3142.016
SRR9715743	Root	3028.371

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	406.741
SRR8749028	MeJA induced 9h	464.418
SRR8749029	MeJA induced 9h	367.348
SRR8749030	Uninduced	592.045
SRR8749031	Uninduced	172.626
SRR8749032	Uninduced	359.842

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.091
SRR8400027	Control - Root	330.926