Gene detail

Gene detail information of Glyur000080s00008685

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19385.1	5.00E-66	zinc ion binding
NR	XP_007154617.1	0	hypothetical protein PHAVU_003G133900g [Phaseolus vulgaris]
Swissprot	tr\|O64571\|UBA1C_ARATH	9.00E-37	UBP1-associated proteins 1C
trEMBL	tr\|V7CCJ3\|V7CCJ3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW26611.1}

Sequence

Transcript Sequence

>Glyur000080s00008685.1
AGAAAAAGAAAAAGAAAAATGAAAAGAAAATAATTCGGTTCTCAGTGGTATCGTTAGGCCGAAGATAAAGAGAAGGGGCACATGTCATTGGAAGAAAACGGAAAACCCTAGCTGGCTCGGCCTTAATGCTTAAACCCCAAAAAACTAAGTTAACGCCAGTTGCAGAACAGAACTATTTTTGTGCATAGCAGCAGCAACGCAAACTCAAAGCTAAAACTCAGATATGGTTTGGTTTCAATGCGAAGATTGCGGAGACAACCTCAAAAAACCCAAGTTGGCCAGTCACTTCCGAACTTGCTCCGCGTACAAGTTGTCGTGCATTGACTGTGGGCAAATATTTGGGCGTGACACCGTTCAGGATCACACACAGTGTATTACAGAAGCGGAAAAGTATGGTCCGAAAGGCCAAGGCAAAACTTTGAACGCTGCAACTGCCAAGCCTAGCAAAGATGGCAAGCAAAAGCCAGAAGTTGATATTAATGTGGGTTTATCTGAACGGCCTCCGTGGTTCTGTAGTCTTTGCAATACGAAAGCTACGAGTAAGCAAGCACTTCTTCTCCATGCTGATGGAAAGAAACACAGGGCAAGAGCCAGAGCATTCCTTGCTTCACAGCANCAACCAGCCCAGACAGACAAATCTGCCCCTGANGCAAAGGTTTCAATGGATACTGCTCCTAATGGNGAGGCAAAAGATGACAAAAATGCAGAGCAGCCAAAACTGCAAGAGTCTTCTAAACAAGATAACTTGAAACCAGNGAACGAAGTTCNTNCAGAAAAGAAAAAGAGGAAACTTGAGGTGTCGGAGCGTGACCTTATTAAAAAAAGCAGGAATGACACTTCAGTTGACATGGGAAATGGGGAAGTAATTCAGAGCAACAAGGCCACAGGAGAGAGCAATTTGAAGAAAGAGATAGTAGCAACTCACTGTACAAGTGCTGTCAACAATAAAATAAAATGGAAGAAGTTTATCAAAGCAGCCTTGAAATCTCATCCTGTTGGAACTTTGAAGATGAAGAAACTGAGAAAAGTTGTCCACAAAGCACTGCAGGAATCTGGCATTGTTGTGAATGAAACTGAATTGAGCGAGGCACTTGAGCAGAAGGTCAATTCCAGCTCCAGATTTGCAGTTGAGAACAAGTACGTGCGATTGGTGGCCAAAGATTGAACACTGTAGTTTGAGTTGTCATGACCAAGAGTCCATTGAAGTTTTGGTAACTGTTACTGATTGATAGATCAACATTCATCCCTCATAAGTATCTCCTTACAGAAAATTTTTGTGAACGAATACTTTATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00080	186662	189495	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000080s00008685.1	PF08790.6	zf-LYAR	30	57	5.20E-14
Glyur000080s00008685.1	PF12874.2	zf-met	95	119	4.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.371
SRR1783600	control	10.241
SRR1783602	moderate drought stress	8.555
SRR1811619	moderate drought stress	8.590

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.038
DRR006520	Root Summer glycyrrhizin high producing strain	14.973
DRR006521	Root Winter glycyrrhizin high producing strain	4.649
DRR006522	Root Winter glycyrrhizin high producing strain	4.259
DRR006523	Root Summer glycyrrhizin low producing strain	17.297
DRR006524	Root Summer glycyrrhizin low producing strain	17.555
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.982
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.048

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.401
SRR2868004	Drought Stress (root)	18.809
SRR2967015	Control (root)	17.881

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.222
SRR9715740	Leaf	16.122
SRR9715741	Leaf	13.077
SRR9715739	Root	0.459
SRR9715742	Root	5.689
SRR9715743	Root	5.158

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.264
SRR8749028	MeJA induced 9h	24.743
SRR8749029	MeJA induced 9h	27.784
SRR8749030	Uninduced	8.703
SRR8749031	Uninduced	4.018
SRR8749032	Uninduced	4.623

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.616
SRR8400027	Control - Root	17.062