Gene detail

Gene detail information of Glyur000080s00008676

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72830.1	5.00E-32	nuclear factor Y, subunit A3
NR	XP_003542351.1	1.21E-88	PREDICTED: nuclear transcription factor Y subunit A-3-like isoform 2 [Glycine max]
Swissprot	tr\|Q93ZH2\|NFYA3_ARATH	5.00E-37	Nuclear transcription factor Y subunit A-3
trEMBL	tr\|I1LY31\|I1LY31_SOYBN	5.00E-89	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G16770.1}

Sequence

Transcript Sequence

>Glyur000080s00008676.1
ATTATTTGAAAACTAGTTCTGGGGTAAAGTTGGCTTGTTCTGTCTCTTTTGTTATACTCTTGTTCTCCTTATTATCTCATTCTCTCTGTTTCTTTTCATGATATAGCATTGTGGATATGAAATAGGATATTATTGAAGGTTTTGAAAATTAAGGCTGCAATATTGTATACATTCTACTCAAGTAATGGTCAAGATCAAAGTATTGACTATGTGGTAGTTCAAATCAAGCTGCATCTCTTGTTGAACCTGATACTATGGACAATTGTTCACAACTTGATTGTAGTCACCCAATGAATCATGCTCCTTATCCTTATGGTNATCCTTTTTTTGGTGGTTCATTAGTTGCTCATGGACCAGTGCCAGAGTCTATTATGCTGGGATTAGCATCCACCAGAATTGCATTACCACTTGATCTAGCAGAAGATGGGCCCATTTATGTTAATGCAAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATAAAAAGTCGAAAGTCNTATCTTCATGAGTCCCGGCACCGCCATGCTTTGAACCGGGTTAGGGGATCCGGGGGACGCTTTCTTAGTGCCAAACAGCTGCAGCTGCAGCAGTCTAATGCCNAACTTGTCACTGATGCGAATGGCGCTCATTCAGGCTCAAACCTTTTCAACCATTATCAAAAGAAAGATACATCAGAGGCTGAAAGTCATCCCTCAAGAACCGGAGAAAGTGCATCTTCTATCACAACTTGCTCTGGCCTAACAAGTAAGTCCAGTTATAGTGTCAATTTCTGGCAGCCTGAGCAGAAGTTCTTAGGGAATCTCCCTAACTGTGGTGGTGGAACTCGGCAATTTGCTCCGGTCGGCCGCTGAGAGGTGTAACCAAGCAAATATCAAGNTCACCAGTGTGGCAAATCATCCTTGGCTTAGTCAATCTATTACTGTCTGTGTTCCATGTGCTACTAAAATGTTGTCCTTATTTTTTTTTTCCATCACTGCTATGTTGTCTTTTTAGAGACTCTTGTATTGGCACTAAGACATTTGCTAGTGCTTTGCCATGTATTTNAAAGATGCTATTGCTCTCACTAGTCTATTGAACTGGATCGGGAAAGTTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00080	134686	137748	+

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0016602 CCAAT-binding factor complex

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000080s00008676.1	PF02045.10	CBFB_NFYA	57	113	9.30E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	59.000
SRR1783600	control	59.398
SRR1783602	moderate drought stress	96.639
SRR1811619	moderate drought stress	96.361

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.349
DRR006520	Root Summer glycyrrhizin high producing strain	34.801
DRR006521	Root Winter glycyrrhizin high producing strain	790.148
DRR006522	Root Winter glycyrrhizin high producing strain	781.991
DRR006523	Root Summer glycyrrhizin low producing strain	37.737
DRR006524	Root Summer glycyrrhizin low producing strain	37.958
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.003
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.368

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.599
SRR2868004	Drought Stress (root)	32.405
SRR2967015	Control (root)	83.923

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.669
SRR9715740	Leaf	9.426
SRR9715741	Leaf	7.886
SRR9715739	Root	32.153
SRR9715742	Root	42.134
SRR9715743	Root	42.480

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.024
SRR8749028	MeJA induced 9h	11.759
SRR8749029	MeJA induced 9h	15.116
SRR8749030	Uninduced	7.950
SRR8749031	Uninduced	15.166
SRR8749032	Uninduced	16.028

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.833
SRR8400027	Control - Root	46.151