Gene detail information of Glyur000080s00008674 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20540.1 | 8.00E-126 | BREVIS RADIX-like 4 |
| NR | XP_003542353.1 | 0 | PREDICTED: protein Brevis radix-like 4-like [Glycine max] |
| Swissprot | tr|Q8GZ92|BRXL4_ARATH | 9.00E-168 | Protein Brevis radix-like 4 |
| trEMBL | tr|K7LYZ0|K7LYZ0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G16796.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00080 | 116843 | 122277 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000080s00008674.1 | PF13713.1 | BRX_N | 29 | 61 | 5.60E-15 |
| Glyur000080s00008674.1 | PF08381.6 | BRX | 138 | 204 | 4.20E-23 |
| Glyur000080s00008674.1 | PF08381.6 | BRX | 327 | 359 | 6.10E-13 |
| Glyur000080s00008674.1 | PF08381.6 | BRX | 390 | 414 | 1.80E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.092 |
| SRR1783600 | control | 1.061 |
| SRR1783602 | moderate drought stress | 1.518 |
| SRR1811619 | moderate drought stress | 1.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.815 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.794 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.179 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.171 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.260 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.173 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.701 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.503 |
| SRR2868004 | Drought Stress (root) | 4.678 |
| SRR2967015 | Control (root) | 4.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.401 |
| SRR9715740 | Leaf | 0.248 |
| SRR9715741 | Leaf | 0.246 |
| SRR9715739 | Root | 1.539 |
| SRR9715742 | Root | 2.265 |
| SRR9715743 | Root | 2.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.317 |
| SRR8749028 | MeJA induced 9h | 16.943 |
| SRR8749029 | MeJA induced 9h | 16.453 |
| SRR8749030 | Uninduced | 6.904 |
| SRR8749031 | Uninduced | 8.558 |
| SRR8749032 | Uninduced | 3.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.984 |
| SRR8400027 | Control - Root | 5.865 |