Gene detail information of Glyur000080s00008670 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G06520.1 | 1.00E-14 | photosystem II subunit X |
| NR | NP_001236974.1 | 2.11E-53 | uncharacterized protein LOC100305808 [Glycine max] |
| trEMBL | tr|C6SWQ2|C6SWQ2_SOYBN | 8.00E-54 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G08630.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00080 | 103077 | 103445 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000080s00008670.1 | PF06596.6 | PsbX | 85 | 122 | 1.80E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.104 |
| SRR1783600 | control | 2.484 |
| SRR1783602 | moderate drought stress | 2.869 |
| SRR1811619 | moderate drought stress | 2.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.584 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.749 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.599 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.994 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.249 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.189 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1211.163 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1209.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.787 |
| SRR2868004 | Drought Stress (root) | 30.897 |
| SRR2967015 | Control (root) | 17.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1019.049 |
| SRR9715740 | Leaf | 1130.382 |
| SRR9715741 | Leaf | 721.797 |
| SRR9715739 | Root | 2.759 |
| SRR9715742 | Root | 1.640 |
| SRR9715743 | Root | 2.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.174 |
| SRR8749028 | MeJA induced 9h | 29.209 |
| SRR8749029 | MeJA induced 9h | 30.583 |
| SRR8749030 | Uninduced | 13.581 |
| SRR8749031 | Uninduced | 4.315 |
| SRR8749032 | Uninduced | 23.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.170 |
| SRR8400027 | Control - Root | 11.965 |