Gene detail

Gene detail information of Glyur000080s00008663

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09380.1	6.00E-41	RNA polymerase III RPC4
NR	XP_003550619.1	5.61E-112	PREDICTED: uncharacterized protein LOC100802173 [Glycine max]
trEMBL	tr\|I1MSB8\|I1MSB8_SOYBN	2.00E-112	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G05820.1}

Sequence

Transcript Sequence

>Glyur000080s00008663.1
CAAGTACTAACACTCCCACGTTTCTGCCATACGGTTACATACGCTTATCCCTCATTGATTTTTAGCATCTTCCCAATTCTTATTATCATATGATTATTCGAATTTCAATCTTTTCTATACAAACGTAATATATAACAACGTAACATACTCTGCTTCTAAGTTCTAATGACTAAACTGTTCCAACTGTGTGTTGCGTTAGGTTCACACATTCTTTTTGTTCCCATTCAATGATTGGATGTCTCGCATCTCACTTGTTGTGATTGTTCTGTGTTTTTATGGTTTATCAAATATCTCATTTAGAATTTTTGAGATCGCCATTGGACTCTTATGGATTCAGAGTCTTCAAAGGACGCTCCTGGTGCCCGAAGGAAGGTGAAATTTGCACCAAGAGCTCCACCTCGTAGAGCGCCAAAGATAGAAGTTAAAAATGAAGTTGTTGAGGATGCTGATGCAGTCCAGGCCAAGGATCTCCTTCGGCGTTTCAATGAGAGTGAGATGAAGGCAAGGAACAAGGTTGAGAAAAAAGTGTCAGCTTCACAAATTGCTTTTGGTTATGGAGGTGAATCAACTATCAAATCATTTCGTATTCCTAGAGGTGGGAGCAATACCNGTGGCAGTCAAAATTTAGCATTCAATGCTGTGAGAGAGAAAGAATACAAAGAACCATGGGACTATTACAGTAATTATCCAGTAACTCTTCCCTTGAGGAGACCATATTCCGGGAACCCAGAATATCTCGATGAGGAGGAATTTGGGGAGGCTGCAGAATCCAGAACTTACGATGAAGACTCATCAAATTCAGCAATGGAGCTTGGCCTTTTGGAGGAAAACCCAGAGTCAAGTATGTTCTTGATTCATTTACCACAAACTTTGCCTATGATCAAACAACCAGCTACTGCTGGTGGCCAAGATGTTAATGAGAACACTAAACGTCCTGGAGGTAAAAAAGATGCTGGAAAGCCCTGCAAGTTGAACGATTTACCATCTGGCTTAATGGGCAAAATGCTTGTATACAAGAGTGGTGCAATCAAGCTGAAGCTTGGCAACACCCTTTATGATATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00080	51341	61944	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006383 transcription from RNA polymerase III promoter

cellular_component
GO:0005666 DNA-directed RNA polymerase III complex

molecular_function

GO:0003677 DNA binding

GO:0003899 DNA-directed RNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000080s00008663.1	PF05132.9	RNA_pol_Rpc4	170	245	7.70E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.310
SRR1783600	control	4.616
SRR1783602	moderate drought stress	4.155
SRR1811619	moderate drought stress	4.595

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.611
DRR006520	Root Summer glycyrrhizin high producing strain	5.980
DRR006521	Root Winter glycyrrhizin high producing strain	5.819
DRR006522	Root Winter glycyrrhizin high producing strain	5.935
DRR006523	Root Summer glycyrrhizin low producing strain	3.217
DRR006524	Root Summer glycyrrhizin low producing strain	4.046
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.754
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.334

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.643
SRR2868004	Drought Stress (root)	3.172
SRR2967015	Control (root)	2.917

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.392
SRR9715740	Leaf	2.348
SRR9715741	Leaf	4.472
SRR9715739	Root	0.591
SRR9715742	Root	2.789
SRR9715743	Root	2.846

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.053
SRR8749028	MeJA induced 9h	4.065
SRR8749029	MeJA induced 9h	2.326
SRR8749030	Uninduced	1.586
SRR8749031	Uninduced	1.220
SRR8749032	Uninduced	0.942

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.565
SRR8400027	Control - Root	6.791