Gene detail information of Glyur000079s00008955 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19480.2 | 5.00E-74 | DNA glycosylase superfamily protein |
| NR | XP_004512049.1 | 3.09E-126 | PREDICTED: putative DNA-3-methyladenine glycosylase YfjP-like [Cicer arietinum] |
| COG | YP_003267890.1 | 2.00E-48 | DNA-3-methyladenine glycosylase II [Haliangium ochraceum DSM 14365] |
| trEMBL | tr|G7KDL7|G7KDL7_MEDTR | 3.00E-119 | HhH-GPD base excision DNA repair family protein {ECO:0000313|EMBL:AES94968.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00079 | 351614 | 352456 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01247 | alkA | EC:3.2.2.21 | Base excision repair | map03410 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000079s00008955.1 | PF00730.20 | HhH-GPD | 112 | 256 | 1.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.061 |
| SRR1783600 | control | 11.505 |
| SRR1783602 | moderate drought stress | 13.740 |
| SRR1811619 | moderate drought stress | 13.632 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.200 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.494 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.517 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.760 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.445 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.234 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.983 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.048 |
| SRR2868004 | Drought Stress (root) | 32.317 |
| SRR2967015 | Control (root) | 35.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.200 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.841 |
| SRR9715743 | Root | 1.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.550 |
| SRR8749028 | MeJA induced 9h | 12.135 |
| SRR8749029 | MeJA induced 9h | 8.664 |
| SRR8749030 | Uninduced | 8.517 |
| SRR8749031 | Uninduced | 10.129 |
| SRR8749032 | Uninduced | 12.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.264 |
| SRR8400027 | Control - Root | 2.071 |