Gene detail information of Glyur000079s00008952 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G18360.1 | 1.00E-103 | alpha/beta-Hydrolases superfamily protein |
| NR | XP_003612012.1 | 1.58E-161 | Epoxide hydrolase [Medicago truncatula] |
| COG | YP_002796278.1 | 3.00E-21 | Alpha/beta hydrolase fold protein [Laribacter hongkongensis HLHK9] |
| trEMBL | tr|G7KDL9|G7KDL9_MEDTR | 6.00E-162 | Alpha/beta fold hydrolase {ECO:0000313|EMBL:AES94970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00079 | 342327 | 344143 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000079s00008952.1 | PF12697.2 | Abhydrolase_6 | 55 | 286 | 2.30E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.551 |
| SRR1783600 | control | 1.543 |
| SRR1783602 | moderate drought stress | 2.418 |
| SRR1811619 | moderate drought stress | 2.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.234 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.145 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.117 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.288 |
| SRR2868004 | Drought Stress (root) | 5.651 |
| SRR2967015 | Control (root) | 3.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.034 |
| SRR9715740 | Leaf | 0.034 |
| SRR9715741 | Leaf | 0.448 |
| SRR9715739 | Root | 5.249 |
| SRR9715742 | Root | 2.526 |
| SRR9715743 | Root | 2.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.611 |
| SRR8749028 | MeJA induced 9h | 17.821 |
| SRR8749029 | MeJA induced 9h | 12.854 |
| SRR8749030 | Uninduced | 10.187 |
| SRR8749031 | Uninduced | 1.438 |
| SRR8749032 | Uninduced | 3.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.118 |
| SRR8400027 | Control - Root | 15.736 |