Gene detail information of Glyur000079s00008948 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G63810.1 | 0 | |
| NR | XP_004512044.1 | 0 | PREDICTED: nucleolar protein 6-like [Cicer arietinum] |
| trEMBL | tr|G7KDK7|G7KDK7_MEDTR | 0 | Nucleolar RNA-associated protein, putative {ECO:0000313|EMBL:AES94958.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00079 | 308771 | 316648 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000079s00008948.1 | PF03813.9 | Nrap | 88 | 199 | 2.10E-26 |
| Glyur000079s00008948.1 | PF03813.9 | Nrap | 203 | 925 | 5.70E-173 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.560 |
| SRR1783600 | control | 5.670 |
| SRR1783602 | moderate drought stress | 4.781 |
| SRR1811619 | moderate drought stress | 4.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.486 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.339 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.097 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.884 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.558 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.572 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.004 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.096 |
| SRR2868004 | Drought Stress (root) | 5.966 |
| SRR2967015 | Control (root) | 6.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.985 |
| SRR9715740 | Leaf | 3.468 |
| SRR9715741 | Leaf | 1.581 |
| SRR9715739 | Root | 0.459 |
| SRR9715742 | Root | 6.399 |
| SRR9715743 | Root | 4.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.629 |
| SRR8749028 | MeJA induced 9h | 5.304 |
| SRR8749029 | MeJA induced 9h | 3.426 |
| SRR8749030 | Uninduced | 1.068 |
| SRR8749031 | Uninduced | 0.427 |
| SRR8749032 | Uninduced | 0.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.516 |
| SRR8400027 | Control - Root | 8.007 |