Gene detail information of Glyur000079s00008935 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29810.1 | 3.00E-50 | Transcriptional coactivator/pterin dehydratase |
| NR | XP_003543016.1 | 7.50E-86 | PREDICTED: uncharacterized protein LOC100788851 [Glycine max] |
| COG | YP_007202898.1 | 2.00E-32 | pterin-4a-carbinolamine dehydratase [Singulisphaera acidiphila DSM 18658] |
| trEMBL | tr|I1M1X9|I1M1X9_SOYBN | 3.00E-86 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G30730.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00079 | 224473 | 226590 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000079s00008935.1 | PF01329.14 | Pterin_4a | 96 | 190 | 7.20E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.143 |
| SRR1783600 | control | 32.259 |
| SRR1783602 | moderate drought stress | 27.489 |
| SRR1811619 | moderate drought stress | 27.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.198 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.733 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.850 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.081 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.513 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.409 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 51.667 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 50.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.983 |
| SRR2868004 | Drought Stress (root) | 19.140 |
| SRR2967015 | Control (root) | 16.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.868 |
| SRR9715740 | Leaf | 39.130 |
| SRR9715741 | Leaf | 31.262 |
| SRR9715739 | Root | 6.616 |
| SRR9715742 | Root | 9.242 |
| SRR9715743 | Root | 7.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.203 |
| SRR8749028 | MeJA induced 9h | 6.965 |
| SRR8749029 | MeJA induced 9h | 7.422 |
| SRR8749030 | Uninduced | 5.756 |
| SRR8749031 | Uninduced | 7.637 |
| SRR8749032 | Uninduced | 2.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.985 |
| SRR8400027 | Control - Root | 20.876 |