Gene detail information of Glyur000079s00008924 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38150.2 | 1.00E-82 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_003516576.2 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9SZL5|PP356_ARATH | 3.00E-99 | Pentatricopeptide repeat-containing protein At4g38150 |
| trEMBL | tr|K7K4F7|K7K4F7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G38330.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00079 | 151431 | 154064 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000079s00008924.1 | PF01535.15 | PPR | 290 | 315 | 7.00E-07 |
| Glyur000079s00008924.1 | PF13041.1 | PPR_2 | 318 | 367 | 2.80E-14 |
| Glyur000079s00008924.1 | PF01535.15 | PPR | 392 | 421 | 0.38 |
| Glyur000079s00008924.2 | PF01535.15 | PPR | 290 | 315 | 7.00E-07 |
| Glyur000079s00008924.2 | PF13041.1 | PPR_2 | 318 | 367 | 2.80E-14 |
| Glyur000079s00008924.2 | PF01535.15 | PPR | 392 | 421 | 0.38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.331 |
| SRR1783600 | control | 12.385 |
| SRR1783602 | moderate drought stress | 7.190 |
| SRR1811619 | moderate drought stress | 8.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.689 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.288 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.003 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.603 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.634 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.476 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.858 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.248 |
| SRR2868004 | Drought Stress (root) | 14.218 |
| SRR2967015 | Control (root) | 15.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.603 |
| SRR9715740 | Leaf | 10.946 |
| SRR9715741 | Leaf | 7.386 |
| SRR9715739 | Root | 2.464 |
| SRR9715742 | Root | 6.338 |
| SRR9715743 | Root | 6.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.159 |
| SRR8749028 | MeJA induced 9h | 25.570 |
| SRR8749029 | MeJA induced 9h | 21.716 |
| SRR8749030 | Uninduced | 9.645 |
| SRR8749031 | Uninduced | 6.260 |
| SRR8749032 | Uninduced | 7.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.640 |
| SRR8400027 | Control - Root | 14.666 |