Gene detail

Gene detail information of Glyur000079s00008920

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16580.1	6.00E-98	Protein phosphatase 2C family protein
NR	XP_007156917.1	0	hypothetical protein PHAVU_002G028000g [Phaseolus vulgaris]
Swissprot	tr\|Q9SUK9\|P2C55_ARATH	7.00E-145	Probable protein phosphatase 2C 55
trEMBL	tr\|V7CJ22\|V7CJ22_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW28911.1}

Sequence

Transcript Sequence

>Glyur000079s00008920.1
GGGAAAGGAATGTGCTTTTTCAATATAAATCACACCCAAGGTTTCGCATTCTTCTTCGAGGGAGAAACTGAATTAAGGGTATTTCTTCGCCTAAGGGATTAAGATGCTATGTGGTAATCTCTCAAGGCTGAATTCTACCATTTGCTGTAGCATTCAGGAAGCAATAGCAAGGCGACAAGGAGTGGCAACATCCTTGTATAGGAATCAACCAGCTCTGTCTCTTTCTTCACTGTATTCAACATCCTCTTCTAGCCGCACGCTTGATAGAAAATCAATGGCTACTTCACCTTCCAATGCTGTGTTGGGAGATGTTTATGTTGATGACTTAATCTCAAGTTGTGGCAGCGTGCTAGACCTCACAAACAAGGCTGGTGTGCACTTCAGAGGCACTACTCATAGAGGTTCCCTGAGAGCCATTGTGAATCTAAGAAGACTACAACCTTTGTATGGNCCTCTCAATTTTGGGCGTTCCACTTTTGATGTTAATTGGAGGAACCGGAATTCGGGTTCAATTCATGGACCATGTCTGAGGAATTTCTTTACCTCTTCTTCTGCTTGCTGCTTAGCTGGTGCTGCACATGATGTCTCATTTGATAGCAGCCCTTCTGATGAACAGCTGGAAAATTCCTCTACTTCACCCGACCTAACTGCTCTTGGGGGCAAGAGTTTGAAGATGTTTTCGGGATCGTGTTACCTACCGCATCCAGATAAGGAGGCGACAGGGGGTGAGGATGCTCATTTTATTTGCACAGATGAACAAGCAATTGGTGTTGCAGATGGTGTAGGTGGCTGGGCAGATGTTGGTGTCAATGCAGGACTGTTTGCCCAGGAACTTATATCCAATTCAGTAAGAGCAATTCAAGAGGAGCCAAAAGGTTCTTTTAATCCAGTAAGAGTGTTAGAGAAGGCTCACTCTAAGACAAAGGCCAAGGGTTCATCAACGGCTTGTATCATTGCTCTTACTGATAAGGGACTGCATGCTATTAATTTGGGTGACAGTGGATTNGTTGTGGTTAGAGGTGGAAGAACCATTTTCAGGTCCCCTGTTCAACAGCACGGCTTCAATTTCACATATCAATTGGAGAGTGGCAAACGAGGCGACCAACCCAGCTCTGGCGAGGTTTTTACAATACCCGTTGCCCCAGGAGATGTCATAGTTGCTGGAACAGATGGCTTATTTGACAACTTGTACAATAAAGATATCATTGCAGAGGTTGTAAATGCAGCCAGAGCTGGATTAGCACCCCAAGTAACTGCTCAGAAGATAGCAGCATTGGCTCGTCAACGAGCATTGGACAAGAAAAGGAAGACACCATTCTCAACTGCTGCTCAGGAGGCTGGATTCCTTTTTCATGGTGGCAAACTTGATGACATAACAGTTGTTGTGTCATACATATCCAGCTCAATCAGTGAGTGATTTTTTTAGCCATCTTTAGTTTTGTTCCATAGTGGCTGTTGTGCGGCCTTTCATTTTTTAACCTTGAATGCACTCTTAGCTGTTTTAGTACTTTTCTCAAATATTAGCTACCAAGCTACACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00079	119829	122816	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000079s00008920.1	PF07228.7	SpoIIE	219	429	3.00E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.785
SRR1783600	control	6.901
SRR1783602	moderate drought stress	6.687
SRR1811619	moderate drought stress	6.515

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.661
DRR006520	Root Summer glycyrrhizin high producing strain	10.596
DRR006521	Root Winter glycyrrhizin high producing strain	8.271
DRR006522	Root Winter glycyrrhizin high producing strain	8.058
DRR006523	Root Summer glycyrrhizin low producing strain	8.522
DRR006524	Root Summer glycyrrhizin low producing strain	8.361
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.317
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.114

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.949
SRR2868004	Drought Stress (root)	14.192
SRR2967015	Control (root)	13.656

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	59.671
SRR9715740	Leaf	95.657
SRR9715741	Leaf	56.088
SRR9715739	Root	10.017
SRR9715742	Root	11.983
SRR9715743	Root	10.875

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.404
SRR8749028	MeJA induced 9h	12.110
SRR8749029	MeJA induced 9h	11.479
SRR8749030	Uninduced	10.535
SRR8749031	Uninduced	11.643
SRR8749032	Uninduced	14.064

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.508
SRR8400027	Control - Root	11.655