Gene detail

Gene detail information of Glyur000079s00008919

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36700.1	1.00E-90	RmlC-like cupins superfamily protein
NR	XP_004512222.1	0	PREDICTED: globulin-1 S allele-like [Cicer arietinum]
COG	NP_844547.1	8.00E-09	hypothetical protein BA_2149 [Bacillus anthracis str. Ames]
Swissprot	tr\|Q9SPL4\|AMP22_MACIN	3.00E-26	Antimicrobial peptide 2d (Precursor)
trEMBL	tr\|G7KC87\|G7KC87_MEDTR	0	Cupin family protein {ECO:0000313\|EMBL:AES94919.2}

Sequence

Transcript Sequence

>Glyur000079s00008919.1
CTATATAGTGCCACCTTTGCTAAGTGCAAGATCACTTCTATCCAACTTCTGCTGCTCTTTTCACTCTTTTGATAATAATGGAGCCTCGCAGCAAAGCTTTCTTAGCTTCACCATTTTCGTCACTCTTGATTTTCTTCCTTATCATCATTTCCTTGTGTGGAGTGAAGGCATCATCAAGTNGTGAGGAGGAGCACAGTGTGAAGCCTCACGAGGGACCTGTGGTGGAGAAGGATCAAAGGACTAAATTACATGTCACTGAATATGGAGAGATCTCTGCCACTGAAGTCAAAGAAGCACACAGAGCCCCACCCTACCATCTTGAGTTCTTCACATTGGAGCCTAACTCTGTGTTCCTTCCCGTTCTTCTCCATGCAGCTATNGTCTTTTATGTTCAAACAGGGAGCGGAAGACTGACATGGGCAAATGAGGATGGTACTAGCACGATCGATTTACGTGAAGGAGATCTCTGCAGCCTCAGAGAAGGATCTGTCTTCTACATACAGAGCAACTTGGAGGCAGAAAGGAAGAAACTCAGGATTTATGCAATGTTTACCAATACAGACGATAGCACTTACGATCCATCGATCGGTGCTTACTCAAGGATCAACAAACTAGTCAAAGGCTTTGATAAGAAAATCGTGCAAGCAGCTTTTAAGGTGCCGGATGATATGGTTGAGGCAATCACAAACAAGACCGAGACACCAGCTATAGTGCATGCGGTTTCAGAGAAGCATAATACTGTATGGGAATTGGAGGCTTCGTTTCTTAAAAACTTCTTAGGCGTTCGGTCCAACTCCAAGAAAGTCAAAACATATAACATCTTTGATAATGACCCTGACTTCAAAAACCGTCATGGATGGACCCTAACGGTGACCAAAAAGCAGCTAAAGCCATTAAAGCGTCACAACATTGGATTTCTGATGGTGAACTTGACCAGGGGATCAATATTGGGGCCACATTGGAACCCGAGGGCAACAGAGGTAGCAGTGGTATTGTGCGGGGAAGGCATGGTCAGAGTAGTGTGTGGAAGCAGCAATGATGACAAGACAGAGTGCCAAAACAAGAGGTTCAGAGTTAAGGAAGGAGACGTTTTTGTGGTGCCTAGGTTTCATGCAATGGCTCAGATGTCATTCAATAAAGAGCCACTTGTATTTCTGGGCTTCAGCACTGCAGCAAAGCATAACTACCCACAGTTTTTGGCAGGAAAGGGATCAGTGCTTCACATTCTTGACAAGCACATACTGGCTACCTCTTTTGGTGTCAGCAAAACAACCATTGACAAGCTTTTGGATTCTCGGGATGATGATTCCATCATCTTCGGGTGTAGTTCATGTGCTGAGGAAGAGGAAAGGATAATGAAGGAAGAAAAAGAGAAGGAAAAGGAGGAGGAAGAGAAGAGGAAAAGGGAGAAAGAGGAAGATGAAAAGAGAGAGGAGGAGAAGAAGAAAGAGGAAGAGGAAGCTAAGAAGAGAGAGGAGGAGAGGAAAAGAGAGGAGGAAGAAGCTAGAAGACAACAGGAAGAGAGGGAACGGAGGCGAGAAGAGGAGGAAGCAAGGAAACAGGAAGAGGCAAGGAGGGAGGAAGAAGAAGCTAGAAGAGAGAGACAAAGGAAAAGAGAAGAAGCTAGGAGACAACAGGAAGAGAGGGAAAGGAGGAGAGAGGAGGAAGCTAGGAGAGAAAGGGAAAAGGAAGAGGAAGCAGCAGAGGGGGAGGAAGAAGCAGCAAGAAGACAACAAGAAAAGAGGGAAAGGAAGCGAGAAGAGGAAGAAGCTAGAAGAGAAAGGGAAGAAGAAGAAGAAGAAGAAACTAGGAGAGAAAGAGAAAAGGCAAGAGAAGAGGAAGCAGAGAGGGAGGAAGAAGAAGCTAGAAGACAGCAAGAAAGGAAGGAGGAAGCAGAGAGAGAGGAAGAAGCGGCNAGAAGACAACAAGAAAAGAGGGAAAGGAAGCGAGAAAAGGAAGAAGCTAGAAGAGAAAGGGAAGAAGAGAAAACTAAGAGAGAAAAGGAAAAGAAACGAGAAGAGGAAGAAGCTGCTAGAAGACAGCAAGAAAGGAGAGAGGAAGCAGAGAGAGAGGAAGAAGCAGCTAGAAGACAGCAAGAAAGAAGGGAAAGGAGGCGAGAAGAGGAGGAAGAGAGAACAAAAAGGGAACAAGAACGTGCTGGAAGACAGCAGCAAGAAAGGAGAAGAAGAGAAACAGAAGCAGAGAGTGAGGAAGAAGCAGCTAGAAGACAACAGGAAAAGAGGGAAAGGAGGAGAGAAGAGGAGGAAGCTAGGACTGAGGAAGAAAGAGAAGGGGAAAGAGAAGAAGAAGAAGAAGAACAAGCTGAGAGAGAGAGAGGAGGAAGGAGGAAACAAAAAGGGGGAGAGGAGGGAAGAAGCAGAGAAGAAGAAGAAGCAACANCAGCAAAATGGGAGGAAGAAGAAGCCAGAAGACAGCAAGAAGAAAGGGAGAGGAAAAGAGAGCGAGAAAGCGACAACAAATACAAATCCATGGAAAGAGAAGTAGAAGGGCAAAGCAAAGAGAGCAGCTTTGAAGGAAGGAGGGTTCTGAAGATGCAGAATGTTTGATTGTGTCTTAATTCTCAAGAGGATTCGCTACTGATATGATGTGTATTAAAAAATAAGAACTTTTCATGCTCCTGTTTCTCTGTTTTCTGCTTGTTTGTTACAAAGTTGAAGGTCTATGTTGCATGAAGCTTGCTTGGTAGTTGGTACTGATGTGTATGTATGTGTAGAATAAAAACTGTTCTGTACTGATATGTATTTAATAAGATCCTTTAATATCTTGTTATGCTATGCAATTGTTTATCTGTTTTCTGCATGCTTGTTACAAAGTTGAAAGTCTATGTTTAGTTTAGTTTTTGTTTGGCCAATTAGGCCTCCACCTTAGCGAAGAAAAAAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00079	115333	119249	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0045735 nutrient reservoir activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000079s00008919.1	PF00190.17	Cupin_1	81	149	2.00E-05
Glyur000079s00008919.1	PF00190.17	Cupin_1	247	398	1.90E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.219
SRR1783600	control	3.348
SRR1783602	moderate drought stress	1.460
SRR1811619	moderate drought stress	1.520

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.037
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	18.418
DRR006522	Root Winter glycyrrhizin high producing strain	18.338
DRR006523	Root Summer glycyrrhizin low producing strain	0.075
DRR006524	Root Summer glycyrrhizin low producing strain	0.038
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.480
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.509

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.094
SRR2868004	Drought Stress (root)	0.096
SRR2967015	Control (root)	0.042

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.092
SRR9715740	Leaf	0.128
SRR9715741	Leaf	0.078
SRR9715739	Root	0.034
SRR9715742	Root	0.157
SRR9715743	Root	0.197

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.268
SRR8749028	MeJA induced 9h	0.347
SRR8749029	MeJA induced 9h	0.381
SRR8749030	Uninduced	0.141
SRR8749031	Uninduced	0.310
SRR8749032	Uninduced	0.115

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.138
SRR8400027	Control - Root	0.072