Gene detail

Gene detail information of Glyur000079s00008916

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36710.1	7.00E-119	GRAS family transcription factor
NR	XP_007156910.1	0	hypothetical protein PHAVU_002G027500g [Phaseolus vulgaris]
Swissprot	tr\|O23210\|SCL15_ARATH	2.00E-157	Scarecrow-like protein 15
trEMBL	tr\|V7CFI5\|V7CFI5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW28904.1}

Sequence

Transcript Sequence

>Glyur000079s00008916.1
ATGAGAGTTCCCGTTTCACCATCCCCACAGNCCAACCCAAAACCCAGCAACACAGCCCGTACCATTGCCCTCCACACCCCTCCCAACAACAACCCAGCAGGCCCGTGTTACGAGCCCACCTCTGTCCTCGACCTCTGCCGGAGCCCGAGTCCGGGCCCGGTCAGCGTCCCCGAAAAGCCCACCGATACCAGCTCCCAAGACCNAGAGTGCCCGGAGCTGGACGAGCATGCGCTGCATAGCCTGGATTGGGATTCCATCATGAAGGACCTTGGCTTGCACGACGACACCGTTTTGAAAACAACCATTCTCGACCACCAAAACAACCCATGCGACCTCCCTCTCCCTGCCCCCGAATTCACCCCCTTCGATCAATCCGCAGAAGCAGAATTCACCACTTTCNCTGCTGACATGGGTGGTTTTATCAACTACAACACCAACACCACCCTCGACAACAGCAACAACAACAACAACGGCTTCGATTTCATCGAAGAGCTTATCCGTGCAGCCGATTGCTTCGACAGCAACCAGCTACAAGTGGCGCACGTGATATTGGAGCGGCTCAATCAACGGCTACGATTTCCTATCGGAAAGCCCCTTCAGCGAGCAGCGTTTCACTTCAAGGACGCTCTGCTGTCCCTTCTCTCCGGTTCGAACCGGACGCCGCGTCTCTCTTCCCTGGTGGAGATCGTGCACGGAATCAGAACCTTCAAGGCCTTCTCAGGAATCTCACCGATCCCAATGTTCTCCATCTTCACAACCAACCAAGCACTCCTCGAAGCGCTCCACGGTGGTTCCCCCTTTATGCACGTCATCGACTTCGATATTGGCCTCGGTGTTCAATACGCTTCTCTCATGAAGGAGATTGCAGAGAACGTGGTGGTGGAGAACAACATGATGAATTCCTCACTCCTCCGAATAACCGCCGTCGTTCCAGAAGAGTACGCCGTGGAGAGCACGCTCGTACGCGACAACCTCGCCGAGTTCGCGAACGAACTCGGGATCCGAGTCCAGGTCGAGTTTGTTTTGCTACGAACCTTCGAGACGCTTTCCTTCAAGGCAGTTAAGTTCGTCGACGGGGAGAAGACCGCCGTGTTGCTCTCTCCGACAATCTTCCGCCGCCTCGTCTCCCCCGCCAATGCCGCAGCGTTCTTGGCCGACGTGAGAAGGGTGTCGCCAAGCGTGGTGGTTTTCGTGGACGGGGAAGGGTGGGCGGAGGCTACGGCGGCGGCGTCGTTCCGGCGAGGCGTGGTGAGCAGCCTGGAGTTCTACGCGATGATGTTGGAGTCGCTGGATGCTTCCGTGATTGGTGGAGGAGGAGGAGACTGGGTGAGGAGGATTGAGATGCTGCATTTGCGGCCGAGGATACTGGCGGCGGTGGAGGGCGTTGGACGGTGGATGTCGCCATGGACGGAGGCGTTTTACGGCGCCGGCATGAGCCCGGTTCAGTTGAGCCAGTTCGCGGATTTTCAAGCGAAGTGCTTGTTGGCCAAGTCGCAAATCAGGGGCTTCCACGTGGCAAAACGTCAGGCTGAGCTGGTGCTCTTCTGGCATGAGCGGGCCATGGTTTCCACGTCAGCTTGGCGCTGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00079	106495	108084	-

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000079s00008916.1	PF03514.9	GRAS	162	528	2.50E-78

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.456
SRR1783600	control	8.295
SRR1783602	moderate drought stress	7.005
SRR1811619	moderate drought stress	7.178

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.491
DRR006520	Root Summer glycyrrhizin high producing strain	5.004
DRR006521	Root Winter glycyrrhizin high producing strain	1.789
DRR006522	Root Winter glycyrrhizin high producing strain	1.877
DRR006523	Root Summer glycyrrhizin low producing strain	8.254
DRR006524	Root Summer glycyrrhizin low producing strain	8.709
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.383
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.242

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.883
SRR2868004	Drought Stress (root)	11.145
SRR2967015	Control (root)	11.902

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.396
SRR9715740	Leaf	15.063
SRR9715741	Leaf	16.456
SRR9715739	Root	2.690
SRR9715742	Root	7.757
SRR9715743	Root	8.187

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.664
SRR8749028	MeJA induced 9h	5.219
SRR8749029	MeJA induced 9h	4.401
SRR8749030	Uninduced	1.818
SRR8749031	Uninduced	1.294
SRR8749032	Uninduced	2.586

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.983
SRR8400027	Control - Root	2.784