Gene detail

Gene detail information of Glyur000079s00008913.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36730.1	5.00E-79	G-box binding factor 1
NR	KHN36143.1	1.22E-179	G-box-binding factor 1 [Glycine soja]
Swissprot	tr\|P42774\|GBF1_ARATH	1.00E-106	G-box-binding factor 1
trEMBL	tr\|I1LHN8\|I1LHN8_SOYBN	7.00E-175	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G06960.2}

Sequence

Transcript Sequence

>Glyur000079s00008913.1
GCTTCCTCAACTTGAGAACCCCTTTTTCGTGTTTGTTGGTTAGTTACTAAAGAACACGCAAACTTTGCCACACACTCACACACAAACACACGCTCTCTCTTTCTCTTTCTCTTTCTGTGGTCTTTGTTTGTTAGACCGGACACAACAAAACAAGACCCCAAAACAGAAACCTCTCTGGCTTTGGCTTCTTAACAACAAAAACAAAACAAAAACCGTAGTATTATTATAGACTTAATTCATCCTTGTCCATCCCAGTTGGACTTCCACCTCACCGTTTTTCACTTCCTTTCTTTGCGCCATGGAAACAGGTGATATAACGACTTGAGCAGTTAACAAAACTTGATCTGGTCACAAATATATTAGATTGGTGGCACTGAAAGGGCAGTTTTTCTGAGCTGATCCAGATGGGGACAGGAGAAGATAACACAGCTAAACCTTCTAAACCAGCTTCTTCAACTTCTTCTACTCAGATACCGTTGGCACCTTCATATCCTGATTGGTCAAGCTCCATGCAGGCTTATTATGCTCCTGGAGTTGCTCCACCTCCTTTTTTTGCCTCAACTGTTGCTTCCCCAACTCCCCATCCCTATTTGTGGGGAAGCCAACACCCTCTAATTCCACCATATGGTACTCCTATTCCATATCCAGCTGTATATCCTCCTGGGAGTGTCTATGCTCATCCTAGCATGACAATGACACCAAGCACCACACATCCTAGTACAGAGAGTGTAGGCAAGGGGCCAGATGGAAAAGATCAGGCTTCTGCCAAAAATCCGAAGGGGACGACGACTGCAAATACAGGTTCCAAAGCAGGAGAGAATGGAAAGGCAGGCTCAGGGTCAGGAAATGATGGCCTCTCTCGAAGGTTTGGCAAGCTGCGGGGATCGTCAGATGCTAGTGATGAGAACACTGACCAACAGGAATCAGCTATGAACAAGAAGGGGAGCTTCAACCAAATGCTTGTTGATGCAGCCAATGCACAGAACAATTCTGTTGGTGCCAATTCTCAATCTGCTGTACCTGGAAAGCCTGTTGTGTCAACAGTGTCTGCAACTAATCTTAACATTGGAATGGACTTGTGGAATGCATCTTCTGCTGGTGCATCTGCTGCTTCGGGAGCTGCTACTCCTCCAACCATAATGGGACGTGAAGTCACACTTGGTGAACCGTGGATACAAGACGAACGTGAGCTGAAAAGACAGAAGAGGAAACAGTCTAACAGAGAGTCAGCTAGGAGGTCAAGACTACGCAAGCAGGCTGAGTGTGAAGAGTTGCAAAGGAGGGTGGAGTCGCTGGGAAATGAGAATCGAAGTTTGAGGGAAGAGCTTCAGAAAGTATCTGAAGAATGTGAGAAGCTTACATCTGAAAATAATTCTATCAAGGAAGAGTTGAAACGGTTGTGCGGGCCAGAAGCAGTTGCTAACCTTGAATAATTCACCTATTTTATTATCATGATAAAGGCAACCGCGAATAATTAATCAACTCCTAGAAGAGACGAATCTGTGATTCTACCGCTGGAAGTTTATCAATGGCCTAATTGAGAATAGGATATAATTTTTTATTTATTTACTGATTTATAGCATTAACCCTCAATTGTCAATTGTTGTAATATTTACCTTTGGGGAAGAGTAGATAGTTTTAGGCTAATTAAGCACTTGTGCTCAGATTTGTTTTGCAACTGACGCTAAGAATTTTCGAGAACCTTGTAAGAGGTAACTGTGGAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00079	94005	99667	+

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000079s00008913.1	PF07777.6	MFMR	1	172	8.90E-47
Glyur000079s00008913.1	PF00170.16	bZIP_1	260	322	3.10E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.825
SRR1783600	control	9.634
SRR1783602	moderate drought stress	10.602
SRR1811619	moderate drought stress	10.497

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.002
DRR006520	Root Summer glycyrrhizin high producing strain	13.084
DRR006521	Root Winter glycyrrhizin high producing strain	38.283
DRR006522	Root Winter glycyrrhizin high producing strain	36.500
DRR006523	Root Summer glycyrrhizin low producing strain	33.853
DRR006524	Root Summer glycyrrhizin low producing strain	33.750
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.792
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.538

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.267
SRR2868004	Drought Stress (root)	38.754
SRR2967015	Control (root)	44.565

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	54.023
SRR9715740	Leaf	43.561
SRR9715741	Leaf	65.959
SRR9715739	Root	6.660
SRR9715742	Root	23.742
SRR9715743	Root	21.429

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.411
SRR8749028	MeJA induced 9h	35.976
SRR8749029	MeJA induced 9h	46.052
SRR8749030	Uninduced	57.298
SRR8749031	Uninduced	116.187
SRR8749032	Uninduced	100.059

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.273
SRR8400027	Control - Root	32.356