Gene detail

Gene detail information of Glyur000079s00008906.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36750.1	2.00E-88	Quinone reductase family protein
NR	XP_007156906.1	6.91E-141	hypothetical protein PHAVU_002G027100g [Phaseolus vulgaris]
COG	YP_003689738.1	3.00E-58	flavoprotein WrbA [Desulfurivibrio alkaliphilus AHT2]
Swissprot	tr\|O23207\|FQRL2_ARATH	1.00E-126	Probable NAD(P)H dehydrogenase (quinone) FQR1-like 2 {ECO:0000305}
trEMBL	tr\|V7CHY9\|V7CHY9_PHAVU	3.00E-141	Uncharacterized protein {ECO:0000313\|EMBL:ESW28900.1}

Sequence

Transcript Sequence

>Glyur000079s00008906.1
CTTTTCTTCATCTGAATGCCACCACAGCGAAGCGATAGTGACGTCACCAATCATTCGAATATACTATACTACTACTCAAAACGCNAAGTCTGAACTCTCACCTCTGAAAATTCTGAACAAAATTCAGTCCTAGTCCTACTTGGATGCTTCCATTCCCTTCGGTTCANAAAATTCTCCACCGTTAGGCCACTCTGCACTCTCCAATTCTCATTTCACATTCCCAATTCGGCTTAACTTTCATCCTTTTCGTTCTTTGAATGGGGAAAGGAGGAGGCTGTGTTCCTAGCAAGAAGAGGGTACAGCGGGTCGCCGGCGAATCCCAGCCAGGCACCGCCGCTGGATCGGCGGAGGCGCAGATCCAGGAGAACTCCAACACTGACGGAACAGATGCGGTGGACCAAGAAACGGCGTCGTCNTCTATGGTGGATGCGAAGCTGAAGATCTTCATCGTGTTCTATTCCATGTATGGGCACGTGGAAGGGTTGGCTAGGAGGTTGAAGAAGGGCGTTGACGGCGTGGAGGGTGTTGAAGGGGTTTTGTACAGGGTGCCGGAGACATTGCCAATTGAGGTCCTGAACCAGATGAAGGCGCCGCCGAAGGACGAGACTATCCCGGAGATAGCGCCGGAGGAGCTTCCGGCCGCCGATGGGGTGTTGTTTGGGTTCCCGACGAGGTATGGGTCCATGGCGGCGCAAATGAAGGCTTTCTTTGACTCCACGGGGCAGTTGTGGAAGGAGCAGAAGCTTGCAGGGAAACCCGCTGGCTTCTTTATCAGTACTGGCACTCAAGGAGGAGGTCAAGAAACCACTGCTTGGACGGCAATCACTCAGCTGGCACACCATGGAATGCTGTTTGTTCCTGTTGGATATACATTTGGACCTGGAATGTTCAAGATGGACTCCATTAGGGGGGGAACTCCATATGGTGCAGGAGTGTTTGCTGGCGATGGCACAAGAGAACCAAGTGAAACAGAGCTGGCACTTGCAGAGCATCAGGGCAAGTATATGGCTGTCATAGTCAAGCGGCTCAACAAGTCCTGATGGTGTTTTCTTGATTTCATTCTATTCTTGTTGGTCATCTGTATTTTTTTTTTGACCCTTCTTTGTTGTCAAATTGGTTGTGGCATTTTACCATTGCATTGTGACGAAGAATTACAGCTCTGTTCCACACTGTCAATTCTGATGGGGATAGGGATTCCCATCTTGTTCTAGGTTCTGCATTGTTTTGGAAGCTGTAGATGTTTATAGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00079	49960	53079	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03809	wrbA	EC:1.6.5.2	Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

biological_process
GO:0045892 negative regulation of transcription, DNA-templated

molecular_function

GO:0010181 FMN binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000079s00008906.1	PF03358.10	FMN_red	89	202	1.00E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.890
SRR1783600	control	9.851
SRR1783602	moderate drought stress	9.976
SRR1811619	moderate drought stress	9.904

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.114
DRR006520	Root Summer glycyrrhizin high producing strain	20.041
DRR006521	Root Winter glycyrrhizin high producing strain	12.539
DRR006522	Root Winter glycyrrhizin high producing strain	12.410
DRR006523	Root Summer glycyrrhizin low producing strain	19.224
DRR006524	Root Summer glycyrrhizin low producing strain	19.118
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.838
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.598

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.094
SRR2868004	Drought Stress (root)	30.792
SRR2967015	Control (root)	27.921

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.347
SRR9715740	Leaf	12.374
SRR9715741	Leaf	14.534
SRR9715739	Root	59.914
SRR9715742	Root	33.679
SRR9715743	Root	32.079

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.604
SRR8749028	MeJA induced 9h	28.263
SRR8749029	MeJA induced 9h	35.662
SRR8749030	Uninduced	9.364
SRR8749031	Uninduced	4.183
SRR8749032	Uninduced	11.884

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.593
SRR8400027	Control - Root	56.528