Gene detail

Gene detail information of Glyur000079s00008899

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36790.1	0	Major facilitator superfamily protein
NR	XP_006573596.1	0	PREDICTED: uncharacterized protein LOC100812646 isoform X1 [Glycine max]
COG	YP_004174130.1	5.00E-42	major facilitator superfamily transporter [Anaerolinea thermophila UNI-1]
trEMBL	tr\|I1J8Y5\|I1J8Y5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G38460.1}

Sequence

Transcript Sequence

>Glyur000079s00008899.1
GTAATTTGCAAATAACAACAACACACGTACATCGGAATTTTCAATATTTAATTACTATTTGTTTTTCAGTTATATTTGTTGTTAGTTTATTGCGTCAGATCCGCCATGGACGCGGGCTTGGTGGCCTTTGTCTGAACATCCTCTTTCTTTCTGTTGTGAATCTCGCGGGGTCGGTCATGGGACTCAGTGGAACCCCAAAACATAGCAGCTCTGTTTTTCTTTCCAAGTCTTCACATTCTGCTTCTCAAACCATGAAAACAAGACAGATTTTTGGCGTGTCTCTCTCGCTCATTCTNATTAACCTGGCTGCTATTATGGAACGTGCTGATGAAAATCTTCTTCCATCTGTCTACAAAGAAGTTAGTGAAGCATTTAATGCAGGGCCATCTGATTTGGGTTACCTCACATTCATAAGGAACTTTGTTCAGGGACTGTCATCTCCTCTGGCTGGTATACTTGTTATTAACTATGATCNCCCAACAGTTCTTGCTATGGGAACTTTCTGCTGGGCTTTATCCACTGCTGCTGTGGGTGCTTGCCATGATTTTCTGCAGGTTGCATTCTGGAGAGCAGTGAATGGCTTTGGTTTGGCAATTGTGATCCCAGCACTACAGTCTTTCATTGCTGATAGCTATAGGGATGGAGTGAGAGGAACTGGATTTGGATTACTGAGCCTTATTGGTAACTTGGGGGGCATAGGAGGTGGTGTTATGGCTACTGTCATGGCTGGCCAGCAGTTTTGGGGAATACAAGGTTGGCGATGTGCCTTCATTTTGATGGCAACTTTGAGTGCATTAATTGGAATGCTTGTTTTACTATATGTGGTTGACCCAAGAAAAAGACTTTCCATCACTCATGATGCTGGTGAGAGTTCAGAAAGGGATGACTCTATCTATAACGGCAATGCTAGTGTAGCATCAATTTGGGTGAACTCTTGGGCAGCCATGAAATCTGTGATCAAAGTGCAAACATTTCAAATAATTGTCTTACAGGGCATTATTGGGTCACTACCATGGACTGCCATGGTTTTCTTCACAATGTGGTTCGAACTAATTGGTTTTGATAATAATACTTCAGCAACCCTCCTCAGTCTTTTTGCCATTGGGTGTGCTATGGGATCCTTCATAGGTGGATCAATAGCTGATCAATTGTCACAAATCTACCCACATTCTGCTCGTATCATGTGTGCACAGTTCAGTGCCTTTATGGGTATTCCATTCTCATGGTTTCTTCTTAAGGTGATTCCTCAGTCAGTGAGTAGTTTTCTTACCTTTTCGGTCACACTCTTTTTGATGGGTCTAACTATCAGCTGGAATGGTACGGCTGCAAATGCCCCCATGTTTGCTGAGGTGGTCCCTGTCAAACACCGAACCATGATTTATGCATTTGATCGAGCTTTTGAAGGCTCGTTTTCTTCTGTTGCGGCTCCACTGGTTGGGATTCTTTCTGAGAGAATGTTTGGTTACAATTCAAAATCTGTTGATCCCATCAAAGGGTCTTCACCTGAGGCTCTTGCCTTGTCAAAGGGCCTTCTTTCAATGATGGCAATTCCTTTTGGATTGTGTTGCTTGTGCTACACACCATTGTATTATATATTTAAGAAGGATCGTGAAAGTGCTAGAAAGCTGGCCGTGAAAGAGGAGGAGATAATGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00079	1620	5230	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000079s00008899.1	PF07690.11	MFS_1	43	355	8.00E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.847
SRR1783600	control	0.823
SRR1783602	moderate drought stress	1.147
SRR1811619	moderate drought stress	0.957

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.914
DRR006520	Root Summer glycyrrhizin high producing strain	0.908
DRR006521	Root Winter glycyrrhizin high producing strain	4.849
DRR006522	Root Winter glycyrrhizin high producing strain	4.748
DRR006523	Root Summer glycyrrhizin low producing strain	3.619
DRR006524	Root Summer glycyrrhizin low producing strain	3.802
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.663
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.689

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.255
SRR2868004	Drought Stress (root)	17.735
SRR2967015	Control (root)	17.051

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.901
SRR9715740	Leaf	8.476
SRR9715741	Leaf	16.388
SRR9715739	Root	3.853
SRR9715742	Root	5.674
SRR9715743	Root	4.845

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.951
SRR8749028	MeJA induced 9h	5.736
SRR8749029	MeJA induced 9h	3.225
SRR8749030	Uninduced	2.770
SRR8749031	Uninduced	2.358
SRR8749032	Uninduced	1.876

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.378
SRR8400027	Control - Root	7.252