Gene detail

Gene detail information of Glyur000078s00005450

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G20450.1	7.00E-07	Dehydrin family protein
NR	ADD09573.1	1.50E-41	dehydrin b [Trifolium repens]
Swissprot	tr\|Q9XJ56\|ECP44_DAUCA	1.00E-20	Phosphoprotein ECPP44
trEMBL	tr\|D3YBC2\|D3YBC2_TRIRP	6.00E-42	Dehydrin b {ECO:0000313\|EMBL:ADD09573.1}

Sequence

Transcript Sequence

>Glyur000078s00005450.1
AACTTAATCCACAAGTCGGTTACAGCTTTTTCATTTTTTATATTTTCTTAATCGCGGGTAGTGCGTGTTGTGTGAAGTATAAAATGCCACCCCACTCTTGCACACTGATCAACAAACTATCATCTTCTTGTTATCGATCTCTCTCTCGAAACACACACTTGTATTGTATACGTTACTTTTCTCGCAGTGCCAGCTAGCTACTTCATATTCCAAAGAAAAGAGAGTTCCGTTAATTTGTTGTTGAGTGATCATCATGGCAGAGGAGAACCAGAACAAGTTCTACGAGACCTCCGAGAGCAGCGAGGTGGAGGTGAAGGATCGGGGTGTGTTCGATTTTCTGGGTAAGAAGAAGGAAGAAAAAGAAGATCAGGAGAAGAAGCCTCATCAAGAGGATCAGGCGATCGTCACGGAGTTTGAGAAGGTGAAGGTGTCAGAGCCAGAGGAGGAGAAGAAACACAGCAGCCTCTTGGACAAGCTTCACCGATCTGACAGCACCTCTAGCTCTTCGAGCGAAGAGGAAGGAGAAGATGGGGAGAAGAAGAAGAAAAAGAAGAAGGAAAAGAAAGTGGTGAAGGAGGGCGAACACGAGAAGCACCACCACGAGGACACTAGTGTTCCGGTTGAGAAGGTTGAGGTGGTTGATGCGAGTGCAGAACAGGGCGACGAAAAGAAGGGGTTCCTCGACAAGATTAAGGGTAAACTGCCTGGGCACAAGAAGACAGAGGAGGGCGCCACCGCCACTGTTCCTCCACCACCTCCACCTGCTGAGACTCATCATGATGGAGAGGATGGGAAGGAGAAAAAGGGTTTCTTAGAAAAGATCAAAGAGAAGATTCCTGGTTATCACCCCAAGACTGAGGAAGACAAGGAGAAAGTTAAGGAGGAAAGTGCCGCTCATTGATTGAGGCTCTGTTGTGATGGGGCATATGGGATTGATTGTGGTTGTGGGTTGCTTTGTTTGATTTTATCAAATGGCCTTGTGGCCTTGTGGGGTTTTACTTTGTGTGTAATTTCTTGATGCATACTTTGTGTGTACTTTTGAATACATAGAATGGCTGTCTGTCTGGGTTTCCTTTATCTCTTTTGGCATAAATTTATGGGGAAAAAAAAAACTAAAATGTGTTAAAAGATACTATTATGGAAGGAAGAATGTATTTTGTTTTGTTTCTGGAATTTCTTTTTCGATTGTCGTCTTTATATTTGTCACCCCCAATAATGAAAAAAGCAGAACCGTTCATGGTTATGATTTTCTCGTGCAATCAAACTCCATGATGGGATGAGTCATCATATAATTGATTGTTTTTATGATCATCGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00078	385288	387092	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006950 response to stress

GO:0009415 response to water

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000078s00005450.1	PF00257.14	Dehydrin	30	196	7.80E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	908.589
SRR1783600	control	912.999
SRR1783602	moderate drought stress	771.617
SRR1811619	moderate drought stress	771.816

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2099.200
DRR006520	Root Summer glycyrrhizin high producing strain	2076.317
DRR006521	Root Winter glycyrrhizin high producing strain	5934.574
DRR006522	Root Winter glycyrrhizin high producing strain	5797.484
DRR006523	Root Summer glycyrrhizin low producing strain	4044.112
DRR006524	Root Summer glycyrrhizin low producing strain	4079.890
DRR006525	Leaf Summer glycyrrhizin high producing strain	375.880
DRR006526	Leaf Summer glycyrrhizin high producing strain	371.045

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	874.587
SRR2868004	Drought Stress (root)	1409.200
SRR2967015	Control (root)	1794.697

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1047.796
SRR9715740	Leaf	728.265
SRR9715741	Leaf	1181.724
SRR9715739	Root	302.911
SRR9715742	Root	1132.815
SRR9715743	Root	976.167

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1067.914
SRR8749028	MeJA induced 9h	1343.419
SRR8749029	MeJA induced 9h	1078.291
SRR8749030	Uninduced	571.267
SRR8749031	Uninduced	178.787
SRR8749032	Uninduced	203.684

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	840.375
SRR8400027	Control - Root	1166.665