Gene detail

Gene detail information of Glyur000078s00005446

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G45000.1	0	AAA-type ATPase family protein
NR	XP_009351259.1	0	PREDICTED: 26S protease regulatory subunit 10B homolog A-like [Pyrus x bretschneideri]
COG	NP_275871.1	2.00E-113	proteasome-activating nucleotidase [Methanothermobacter thermautotrophicus str. Delta H]
Swissprot	tr\|Q9MAK9\|PS10B_ARATH	0	26S protease regulatory subunit S10B homolog B
trEMBL	tr\|W9S5D2\|W9S5D2_9ROSA	0	26S protease regulatory subunit S10B-B-like protein {ECO:0000313\|EMBL:EXC26654.1}

Sequence

Transcript Sequence

>Glyur000078s00005446.1
AAAGTAAGAAAAAAGAAGAAGGAAAAAACAAGACCAAAAATTACAGACAACAACAAAACAGGAACACCCAAACCCACTCCCTAATCCCTGTCTCCACGGCGGAACGCGACCAGGGCAAGTGAGACAGCCGGCGGCGGCGCGTCCCACAGCGTCAATCTCTCATGGCCATCGCGCCCCAGCTTGGAAANGAGGTCAGCGCTCCGGTTGCCCCGCGATTCAGATGCTGCAAGCACACCCTCCACTCCCTTTGCAGAAAACAAAATTATGTAAACTAGAGTGGCATTTGTTTTATTAGGTGGCTCCTCCTCCTCATCATCATCTGAATCTATATCTGAGTGCCGAAACTGAGATGTGATTTGTTAATTGATTGGGGAGAGCGAGAGAAAGCGAAAACAGAAACCTTAGAAGAATGCGAAGTTGAAGTTGTCGAGTTGAACCCAATTGAGAGTTTGAAGTTTGTTAGAATATTAGAATGCATCGATGCATTCGCAGGCAGCGTGGATCACAATGCCGAAGAACAGATGGCCGCTCACGTCAGTGGCATTCTTGTCCCTCTCAACCGTCACGCTCCTCTTCATCCGAACCACTTCCTATTCNTGCAACTCCAACGCCGTTACTCAGCATTTGGGAGCATCCGAACCTGAGGTTCGGTCACCGACTCCTCTGGAGTTCATGAAGTCGAAGCTGGTTCTGATGGTTCAGAAAACAAGTCAGATCCCGAACCCATAGGTTACAAGTCCATGCATGTACTTATACTTCAGTGTAGTCTAACAACCTCTAACAGACTCTAACTGAATATAACAGATTCAGTTACGCCTAGGATACTAGTTTTCTTGCTTAGGCGGCAACTGAACTTCTCCAAATATTCCATATATATTGGGCGAACATGAAAGAGAGCGCAGCGCAGCGGCGATCAATTCATATCCATATCATCACTATCAGAGAGAGGAGAGTTGAGTTGAGTTCGTTATTGTTGTTGGGATTNGAAGATGTCGACGGGCCAGACCGATGATGCTGCACTACGTCGTGCCGTGGTGGCTGNGTATCGGATGAAGCTCCTCCACCTCAAGGTGCTTGATTCCATTGTCCGATCAGTTAGAGAGAATTTGCGGACTGCAAAGAAGGATTTCTCGAAAACCGTGGATGATTTAAAGTACCTCCGGAGTACTGGCTTAGGGGTTGCAGAAGTTGTAAAGCCTCTTGACAATGAACGCGTGATAGTTAAAAGGTACAATGGTCGACTAAGATGTGTTGTTGGCTGTCATAGTAAGGTGAACAAGGAGAAGCTGATTGCAGGAACTAGAGTTGCGCTGGATATGTCTACGCTAGCCATTTTGCGAATTCTTCCTCGTGAAGTTAACCCAGTTGTATATAATATGCTACATGAAGACCCAGGAAAGGTTAGTTACTCTGCACTTGGAGGGCTTTCAAATCAGATTCAAGAACTCAAGGAATCAATTGAACTGCCTCTAATGGATCCTGAGATTTTTCTTAGGGTTGGAATCAAACCCCCCAAGGCTGTTCTTCTTTATGGACCTCCTGGAACTGGGAAGACATTATTGGCAAGAGCAATTGCCAGCAACATAGATGCTAACTTCTTGATGGTTGTATCTAGTGCTTTAACTGATAANTATGTTGGTGAAAGCGCAAGAATGATTAGGGAAATATTTGGATATGCTCGCGATCATCAGCCTTGCATCATATTCATGGATGAGATTGATGCCATTGGTGGACGGCGTTTCAGTGAGGGCACAAGTGCTGATNGTGAAGTTCAAAGAACCCTCATGGAGCTACTTAACCAGCTGGATGGATTTGATCAGCATGGAAAGGTTAAAATGATTATGGCGACAAATAGGCCTGACGTTCTTGACCCAGCCCTTCTTCGCCCGGGTCGAATTGATCGGAAAATTGAATTTCCATTACCAAACCAGCAGTCGAGGATGGAAATCCTCAAAATCCATGCTGCTGGAATTGCAAAGCATGGTGAAATTGACTATGAAGCAGTTGTTAAGCTTGCTGAGGGGTTTAATGGTGCTGATCTTCGTAATGTTTGCACTGAAGCTGGGATGTCTGCCATTCGTGCAGAACGTGATTATGTAATTCATGAAGATTTCATGAAGGCTGTGCGCAAATTGAACGAAGCAAAGAAACTGGAATCAAGCGCCCATTATAATGCAGATTTTGGGAAAGATTAAGATCAATTTGTTGTTGGCACTACCCAAAGGACTTCTGGAGCAAGTAATACACCACTTTCATTGTTAGGTCTCTTCCAGCCACTAACCGATATACTNTTGCCATGTAAGCTTGAACAATTTTTTCATTGGCTTAGCAATCTTCTCTGTATCAAATATTAACCATGGGTTACAGTATGATTTTTTTTTTGTTAATACAGTATGATGTTTTACAGTAGTTACATGGCATTTTCTTTCCCGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00078	370683	375087	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030163 protein catabolic process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0005524 ATP binding

GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000078s00005446.1	PF00004.24	AAA	178	311	1.20E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.387
SRR1783600	control	8.387
SRR1783602	moderate drought stress	9.716
SRR1811619	moderate drought stress	9.495

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.284
DRR006520	Root Summer glycyrrhizin high producing strain	6.113
DRR006521	Root Winter glycyrrhizin high producing strain	2.959
DRR006522	Root Winter glycyrrhizin high producing strain	2.775
DRR006523	Root Summer glycyrrhizin low producing strain	4.611
DRR006524	Root Summer glycyrrhizin low producing strain	4.336
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.973
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.037

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.028
SRR2868004	Drought Stress (root)	4.916
SRR2967015	Control (root)	4.830

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.176
SRR9715740	Leaf	2.390
SRR9715741	Leaf	2.152
SRR9715739	Root	1.034
SRR9715742	Root	2.440
SRR9715743	Root	2.078

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.158
SRR8749028	MeJA induced 9h	1.414
SRR8749029	MeJA induced 9h	1.103
SRR8749030	Uninduced	0.605
SRR8749031	Uninduced	1.460
SRR8749032	Uninduced	0.584

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.744
SRR8400027	Control - Root	13.502