Gene detail

Gene detail information of Glyur000078s00005440

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39150.2	4.00E-145	DNAJ heat shock N-terminal domain-containing protein
NR	NP_001242400.1	0	uncharacterized protein LOC100787075 [Glycine max]
COG	YP_001940904.1	1.00E-17	DnaJ-class molecular chaperone with C-terminal Zn finger domain [Methylacidiphilum infernorum V4]
Swissprot	tr\|Q8GYX8\|DNJ10_ARATH	4.00E-119	Chaperone protein dnaJ 10
trEMBL	tr\|C6TI60\|C6TI60_SOYBN	0	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU21512.1}

Sequence

Transcript Sequence

>Glyur000078s00005440.1
CTGTATTCAAGATTTGAACGTTCGCTGAATGGAAACTTCGCTGAACGCCTGAACGTTGAGAGTTGAATAGAAACACGAGAAATGGATCCTTCTTTCGTCGTGACATAAGCATTCAGCAACAGGCCTCATGCTTAAGGACAAAGTAATCAGCTACGGCGTCCNTTTAACACGGCAACGTTTTCCTCTTCCACGCACCCCCGATCGAGAAGAATATCTGTGTTGCTTCTAATTGTTTTGAAGCTGTGAATTGTGATTTGAATATCAAACCATGGTGAAGGAGACTGCGTTCTACGACATATTAGGCGTCAAAGTGGATGCATCCTCTGCAGAGATCAAGAAGGCTTATTACATCAAGGCAAGGATAGTTCACCCTGATAAAAATCCTGGAGATCCAAAGGCTGCAGAAAATTTTCAGGTACTTGGTGAGGCTTACCAGGTTTTGAGTGATCCTAATAAGCGGGAAGCATATGATAAGCATGGAAGGGAAGGGGTACCACAAGAATTCATGATGGATCCTGCAGCTGTATTTGGAATGCTTTTTGGAAGTGAATTGTTTGAAGAATATATTGGAAAACTTGCATTGGCGTCTTTATCATCTATTGAAGTAGAGGAAGAGTCCCCGGATATTGAAGTTCGCAAGCAGAAAATTCAAGAAAAGATGAAAACACGGCAGAAGGAAAGGGAACAAAAGCTTATAGTGACNCTGAAAGATCGCTTGCAACTATTTGTTGATGGTCGAACAGATGAATTTATAAANTGGGCAAATTCAGAAGCATGTCATCTTTCAAAAGCTGCTTTTGGCGAGGCCATGCTACATACAATTGGTTATATCTACACCCGAAAAGCTGCAAGAGAACTTGGAAAGGATAGACGGTATATGAAGGTTCCCTTTTTGGCAGAGTGGGTACGAGACAAAGGACACCGGATAAAGTCACAAGTGATGGCAGCCTCGGGTGCTGTGTCCTTGATTCAAATACAGGAAGAGCTCAAGAGACTAAACCAGGGAGAAAACAAAGAAGAAAACATGGTGAAAGCTATTGAGGATAAGAAGGATGCCATGATAAATTCCCTTTGGCAGATCAACGTTATTGATATTGAATCAACTCTGTCACATGTCTGCCATGCTGTTCTCACAGATCCTGGTGTCTCCAAAGATGTTNTAAGGTTACGGGCCAAAGCGTTGAAGAAGTTGGGAACTATCTTTCAAGGTTCTAAGTCTNCTTACAACAGAGAAAACAGTCTACGTCACGAGTGTGACAAACCAAAAGAGGCTTCTACGTCATCATAGTCATTACTTTGCAAATAATGCTTGTTCCGTTTGTCTCATATGATTCTGCATTGATTTTTGTAACATCCCATACTTTTCGAAATATATTTTCAATTAATTTACTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00078	340627	345528	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000078s00005440.1	PF00226.26	DnaJ	7	68	1.30E-24
Glyur000078s00005440.1	PF14308.1	DnaJ-X	134	326	2.30E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.011
SRR1783600	control	13.284
SRR1783602	moderate drought stress	13.404
SRR1811619	moderate drought stress	13.205

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.286
DRR006520	Root Summer glycyrrhizin high producing strain	13.869
DRR006521	Root Winter glycyrrhizin high producing strain	20.678
DRR006522	Root Winter glycyrrhizin high producing strain	20.358
DRR006523	Root Summer glycyrrhizin low producing strain	43.836
DRR006524	Root Summer glycyrrhizin low producing strain	44.175
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.077
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.345

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.539
SRR2868004	Drought Stress (root)	79.156
SRR2967015	Control (root)	44.125

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.889
SRR9715740	Leaf	23.974
SRR9715741	Leaf	46.195
SRR9715739	Root	2.456
SRR9715742	Root	7.463
SRR9715743	Root	8.395

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.427
SRR8749028	MeJA induced 9h	61.029
SRR8749029	MeJA induced 9h	78.843
SRR8749030	Uninduced	118.041
SRR8749031	Uninduced	134.697
SRR8749032	Uninduced	119.982

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.594
SRR8400027	Control - Root	31.659