Gene detail

Gene detail information of Glyur000078s00005430

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G21540.2	SEC14-like 3
NR	XP_004500799.1	PREDICTED: uncharacterized protein LOC101489636 isoform X4 [Cicer arietinum]
Swissprot	tr\|Q93ZE9\|SFH3_ARATH	Phosphatidylinositol/phosphatidylcholine transfer protein SFH3
trEMBL	tr\|K7KSF7\|K7KSF7_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G01270.2}

Sequence

Transcript Sequence

>Glyur000078s00005430.1
ATGTGGATTTGTGAAACAACGGAGTGGCTTGCATTTCGCCAACACCAAATCCCCTCAAAGCAACTGAAGCTGAAAAAGAGTCATGTCGATGTTGAAGACCCCGTGCACATGAAGGCTCAATTGATGTATGCTAGTCATGAAATCGAATCTTCCGAGGATGAAAGGAAGACAAAGCTTGGGTCGCTAAAGAAGGTGGCAATCAGTGCCTCAAGTAAGTTCAAGCACTCCTTTGCCAAGAAGGGGCGGAGGCACAGCAGGGTTGCGTCTATCTCTCTTGAGGATGAACTTGATGGAGAAGAGTTGCAGGCAGTTGATGCTTTTCGCCAAGCACTTATCTTGGAAGAGCTATTACCCTCAAAGCATGATGATCCTCATATGATGCTAAGATTCTTGAGGGCAAGAAAGTTTGACATAGAGAAAACAAAACAAATGTGGGATGATATGCTTAAGTGGAGGAGGGAATTTGGTGCTGACACTATCATGGAGGATTTTGAATTCAAGGAAATAGATGAAGTTCTGAAATACTACCCACAAGGGCATCATGGAGTTGACAAGGATGGACGACCTGTTTACATTGAAAAACTGGGTCAGGTTGACTCTAACAAGCTGATGCAAGTAACAACAATGGAGCGTTATCTCAAATACCATGTTAGAGAGTTTGAGAGGACCTTTGCTGTTAAGTTGCCTGCATGTTCAATCGCAGCAAAAAAGCACATTGACCAAAGCACAACTATTTTGGATGTGCAAGGAGTGGGTCTTAGAAGCATGAACAAAGCNGCAAGGGATCTCCTCCAGAGGCTTCAGAAGATTGATGGTGATAACTACCCTGAGTCCCTCAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACACTGTTAAGTCATTCCTTGATCCCAAGACCACCGCAAAAATCCATGTCCTAGGTAACAAATACCAGAGCAAGTTGCTTGAAATCATTGATGCCAGTGAGCTTCCAGNGTTCTTGGGTGGTACTTGTACCTGTGCAGATAAAGGTGGTTGTATGCTTTCTGACAAGGGTCCTTGGAATGATCCAGAGATCTTGAAGATGGTTCAAAATGGTGAGGGCGTATGCAAGAGAAGAACCTCATTCAGGATTGAGGAGAAAACAATCAATGAAGATGCAACTGCATATCAGAAGAAGTTATTTGCAACAATATTTAATAACTTCAGTATCCTTGTTTCTCTTGCCTGCAATATTAAGGGATGCAAAGAATCATTTCCAAAGACCCACGATGTTCAATGTTTATCAGTGGACCAACCCAAACNCTGCTATGACGCCTTTGTCCCAATGCTTGACAAGTCAGTCGATTCATCTTGGAAGAAACTTGCACTCTCTAAAGATTGTTTCCCCAACAATAATGGCAAGAATTCTGATGGGTTTAGCAATCATTTTGTTGGTGGAATCATGGCACTTGTCATGGGAATTGTAACCNTGTTCCGCATGACAAGGAACATGCCAAGGAAAATCACCGAGGCAGCACTGTATGGGAGCTCAGTATATTATGATGGGACTGTGANGAAAGCGCCTACCATTTCAACCAATGAGTGCATGGCCATGATGAAGCGCATGGCTGAGCTTGAAGAGAAAGTGACTGTTCTCAGCATCAAACCTGCCATGCCTCCAGAAAAGGANGAATTGCTCAATAATGCTCTCAGCAGAGTCAGTACCCTGGAACAACAGTTGGTTGCAACCAAAAAGGCACTTGATGATGCCCATGCTCGACAAGTGGAACTCCAAGTTCAAATTGACAAGAAGAAAAAGAAGAAGAAGTTGTTCCGCCTCCGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00078	291236	296167	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0005622 intracellular

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000078s00005430.1	PF03765.10	CRAL_TRIO_N	102	147	1.00E-10
Glyur000078s00005430.1	PF00650.15	CRAL_TRIO	171	337	4.20E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.741
SRR1783600	control	1.845
SRR1783602	moderate drought stress	1.331
SRR1811619	moderate drought stress	1.307

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.298
DRR006520	Root Summer glycyrrhizin high producing strain	0.374
DRR006521	Root Winter glycyrrhizin high producing strain	0.210
DRR006522	Root Winter glycyrrhizin high producing strain	0.162
DRR006523	Root Summer glycyrrhizin low producing strain	0.803
DRR006524	Root Summer glycyrrhizin low producing strain	0.621
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.210
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.224

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.032
SRR2868004	Drought Stress (root)	6.241
SRR2967015	Control (root)	5.887

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.786
SRR9715740	Leaf	0.798
SRR9715741	Leaf	1.031
SRR9715739	Root	1.085
SRR9715742	Root	1.910
SRR9715743	Root	0.905

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.370
SRR8749028	MeJA induced 9h	0.021
SRR8749029	MeJA induced 9h	0.158
SRR8749030	Uninduced	0.127
SRR8749031	Uninduced	0.112
SRR8749032	Uninduced	0.096

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.310
SRR8400027	Control - Root	7.115